Difference between revisions of "Template:Virginia/scripts/seqDataJS"
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| − | var roligoFlipper = `LOCUS r_oligo_Flipper 3220 bp ds-DNA circular 02-SEP-2020 | + | /*This file is used to store the text from the .gb files in a form that's readable by other scripts*/ |
| + | |||
| + | var sequences = {} | ||
| + | |||
| + | sequences.gBlockA = {}; | ||
| + | sequences.gBlockA.name = "gBlock A"; | ||
| + | sequences.gBlockA.seqType = "linear"; | ||
| + | sequences.gBlockA.data = `LOCUS gBlock_A 995 bp ds-DNA linear 02-SEP-2020 | ||
| + | DEFINITION . | ||
| + | FEATURES Location/Qualifiers | ||
| + | misc_feature 863..870 | ||
| + | /label="BioBrick Scar" | ||
| + | /ApEinfo_revcolor=#9eafd2 | ||
| + | /ApEinfo_fwdcolor=#9eafd2 | ||
| + | misc_feature 785..790 | ||
| + | /label="double stop codon" | ||
| + | /ApEinfo_revcolor=#c6c9d1 | ||
| + | /ApEinfo_fwdcolor=#c6c9d1 | ||
| + | misc_feature 18..979 | ||
| + | /label="gBlock A" | ||
| + | /ApEinfo_revcolor=#f58a5e | ||
| + | /ApEinfo_fwdcolor=#f58a5e | ||
| + | stem_loop 883..905 | ||
| + | /label="stem loop" | ||
| + | /ApEinfo_revcolor=#ff9ccd | ||
| + | /ApEinfo_fwdcolor=#ff9ccd | ||
| + | misc_feature 110..815 | ||
| + | /label="RFP" | ||
| + | /ApEinfo_revcolor=#faac61 | ||
| + | /ApEinfo_fwdcolor=#faac61 | ||
| + | misc_feature 82..89 | ||
| + | /label="BioBrick Scar" | ||
| + | /ApEinfo_revcolor=#9eafd2 | ||
| + | /ApEinfo_fwdcolor=#9eafd2 | ||
| + | misc_feature 97..101 | ||
| + | /label="strong RBS" | ||
| + | /ApEinfo_revcolor=#c7b0e3 | ||
| + | /ApEinfo_fwdcolor=#c7b0e3 | ||
| + | misc_feature 110..815 | ||
| + | /label="BBa_E1010 (RFP)" | ||
| + | /ApEinfo_revcolor=#b1ff67 | ||
| + | /ApEinfo_fwdcolor=#b1ff67 | ||
| + | misc_feature 110..112 | ||
| + | /label="start codon" | ||
| + | /ApEinfo_revcolor=#84b0dc | ||
| + | /ApEinfo_fwdcolor=#84b0dc | ||
| + | misc_feature 90..104 | ||
| + | /label="BBa_B0030 (strong RBS)" | ||
| + | /ApEinfo_revcolor=#b4abac | ||
| + | /ApEinfo_fwdcolor=#b4abac | ||
| + | misc_feature 822..862 | ||
| + | /label="BBa_B0012" | ||
| + | /ApEinfo_revcolor=#b7e6d7 | ||
| + | /ApEinfo_fwdcolor=#b7e6d7 | ||
| + | misc_feature 822..916 | ||
| + | /label="BBa_B0014 (double terminator)" | ||
| + | /ApEinfo_revcolor=#85dae9 | ||
| + | /ApEinfo_fwdcolor=#85dae9 | ||
| + | misc_feature 871..916 | ||
| + | /label="BBa_B0011" | ||
| + | /ApEinfo_revcolor=#c6c9d1 | ||
| + | /ApEinfo_fwdcolor=#c6c9d1 | ||
| + | misc_feature 18..39 | ||
| + | /label="BioBrick Prefix " | ||
| + | /ApEinfo_revcolor=#84b0dc | ||
| + | /ApEinfo_fwdcolor=#84b0dc | ||
| + | misc_feature 90..916 | ||
| + | /label="From BBa_K3114015" | ||
| + | /ApEinfo_revcolor=#b7e6d7 | ||
| + | /ApEinfo_fwdcolor=#b7e6d7 | ||
| + | misc_feature 794..799 | ||
| + | /label="double stop codon" | ||
| + | /ApEinfo_revcolor=#75c6a9 | ||
| + | /ApEinfo_fwdcolor=#75c6a9 | ||
| + | misc_feature 40..74 | ||
| + | /label="BBa_J23105" | ||
| + | /ApEinfo_revcolor=#f58a5e | ||
| + | /ApEinfo_fwdcolor=#f58a5e | ||
| + | ORIGIN | ||
| + | 1 GACTTACGTC TCGtctggaa ttcgcggccg cttctagagt ttacggctag ctcagtccta | ||
| + | 61 ggtactatgc tagcCGAGAC Ctactagaga ttaaagagga gaaatactaa tggcttcctc | ||
| + | 121 cgaagacgtt atcaaagagt tcatgcgttt caaagttcgt atggaaggtt ccgttaacgg | ||
| + | 181 tcacgagttc gaaatcgaag gtgaaggtga aggtcgtccg tacgaaggta cccagaccgc | ||
| + | 241 taaactgaaa gttaccaaag gtggtccgct gccgttcgct tgggacatcc tgtccccgca | ||
| + | 301 gttccagtac ggttccaaag cttacgttaa acacccggct gacatcccgg actacctgaa | ||
| + | 361 actgtccttc ccggaaggtt tcaaatggga acgtgttatg aacttcgaag acggtggtgt | ||
| + | 421 tgttaccgtt acccaggact cctccctgca agacggtgag ttcatctaca aagttaaact | ||
| + | 481 gcgtggtacc aacttcccgt ccgacggtcc ggttatgcag aaaaaaacca tgggttggga | ||
| + | 541 agcttccacc gaacgtatgt acccggaaga cggtgctctg aaaggtgaaa tcaaaatgcg | ||
| + | 601 tctgaaactg aaagacggtg gtcactacga cgctgaagtt aaaaccacct acatggctaa | ||
| + | 661 aaaaccggtt cagctgccgg gtgcttacaa aaccgacatc aaactggaca tcacctccca | ||
| + | 721 caacgaagac tacaccatcg ttgaacagta cgaacgtgct gaaggtcgtc actccaccgg | ||
| + | 781 tgcttaataa cgctgatagt gctagtgtag atcgctaata atcacactgg ctcaccttcg | ||
| + | 841 ggtgggcctt tctgcgttta tatactagag agagaatata aaaagccaga ttattaatcc | ||
| + | 901 ggctttttta ttatttGGTC TCGAAAAAAA ACGTGGCGCC CGAACAGGGA CGGATAGCTC | ||
| + | 961 AGTCGGTAGA GCATCAGACT TTCGAGACGC TTGTG | ||
| + | //` | ||
| + | |||
| + | sequences.roligoFlipper = {}; | ||
| + | sequences.roligoFlipper.name = "r_oligo Flipper" | ||
| + | sequences.roligoFlipper.seqType = "both"; | ||
| + | sequences.roligoFlipper.data = `LOCUS r_oligo_Flipper 3220 bp ds-DNA circular 02-SEP-2020 | ||
DEFINITION . | DEFINITION . | ||
FEATURES Location/Qualifiers | FEATURES Location/Qualifiers | ||
Revision as of 09:17, 24 October 2020
/*This file is used to store the text from the .gb files in a form that's readable by other scripts*/
var sequences = {}
sequences.gBlockA = {}; sequences.gBlockA.name = "gBlock A"; sequences.gBlockA.seqType = "linear"; sequences.gBlockA.data = `LOCUS gBlock_A 995 bp ds-DNA linear 02-SEP-2020 DEFINITION . FEATURES Location/Qualifiers
misc_feature 863..870
/label="BioBrick Scar"
/ApEinfo_revcolor=#9eafd2
/ApEinfo_fwdcolor=#9eafd2
misc_feature 785..790
/label="double stop codon"
/ApEinfo_revcolor=#c6c9d1
/ApEinfo_fwdcolor=#c6c9d1
misc_feature 18..979
/label="gBlock A"
/ApEinfo_revcolor=#f58a5e
/ApEinfo_fwdcolor=#f58a5e
stem_loop 883..905
/label="stem loop"
/ApEinfo_revcolor=#ff9ccd
/ApEinfo_fwdcolor=#ff9ccd
misc_feature 110..815
/label="RFP"
/ApEinfo_revcolor=#faac61
/ApEinfo_fwdcolor=#faac61
misc_feature 82..89
/label="BioBrick Scar"
/ApEinfo_revcolor=#9eafd2
/ApEinfo_fwdcolor=#9eafd2
misc_feature 97..101
/label="strong RBS"
/ApEinfo_revcolor=#c7b0e3
/ApEinfo_fwdcolor=#c7b0e3
misc_feature 110..815
/label="BBa_E1010 (RFP)"
/ApEinfo_revcolor=#b1ff67
/ApEinfo_fwdcolor=#b1ff67
misc_feature 110..112
/label="start codon"
/ApEinfo_revcolor=#84b0dc
/ApEinfo_fwdcolor=#84b0dc
misc_feature 90..104
/label="BBa_B0030 (strong RBS)"
/ApEinfo_revcolor=#b4abac
/ApEinfo_fwdcolor=#b4abac
misc_feature 822..862
/label="BBa_B0012"
/ApEinfo_revcolor=#b7e6d7
/ApEinfo_fwdcolor=#b7e6d7
misc_feature 822..916
/label="BBa_B0014 (double terminator)"
/ApEinfo_revcolor=#85dae9
/ApEinfo_fwdcolor=#85dae9
misc_feature 871..916
/label="BBa_B0011"
/ApEinfo_revcolor=#c6c9d1
/ApEinfo_fwdcolor=#c6c9d1
misc_feature 18..39
/label="BioBrick Prefix "
/ApEinfo_revcolor=#84b0dc
/ApEinfo_fwdcolor=#84b0dc
misc_feature 90..916
/label="From BBa_K3114015"
/ApEinfo_revcolor=#b7e6d7
/ApEinfo_fwdcolor=#b7e6d7
misc_feature 794..799
/label="double stop codon"
/ApEinfo_revcolor=#75c6a9
/ApEinfo_fwdcolor=#75c6a9
misc_feature 40..74
/label="BBa_J23105"
/ApEinfo_revcolor=#f58a5e
/ApEinfo_fwdcolor=#f58a5e
ORIGIN
1 GACTTACGTC TCGtctggaa ttcgcggccg cttctagagt ttacggctag ctcagtccta
61 ggtactatgc tagcCGAGAC Ctactagaga ttaaagagga gaaatactaa tggcttcctc
121 cgaagacgtt atcaaagagt tcatgcgttt caaagttcgt atggaaggtt ccgttaacgg
181 tcacgagttc gaaatcgaag gtgaaggtga aggtcgtccg tacgaaggta cccagaccgc
241 taaactgaaa gttaccaaag gtggtccgct gccgttcgct tgggacatcc tgtccccgca
301 gttccagtac ggttccaaag cttacgttaa acacccggct gacatcccgg actacctgaa
361 actgtccttc ccggaaggtt tcaaatggga acgtgttatg aacttcgaag acggtggtgt
421 tgttaccgtt acccaggact cctccctgca agacggtgag ttcatctaca aagttaaact
481 gcgtggtacc aacttcccgt ccgacggtcc ggttatgcag aaaaaaacca tgggttggga
541 agcttccacc gaacgtatgt acccggaaga cggtgctctg aaaggtgaaa tcaaaatgcg
601 tctgaaactg aaagacggtg gtcactacga cgctgaagtt aaaaccacct acatggctaa
661 aaaaccggtt cagctgccgg gtgcttacaa aaccgacatc aaactggaca tcacctccca
721 caacgaagac tacaccatcg ttgaacagta cgaacgtgct gaaggtcgtc actccaccgg
781 tgcttaataa cgctgatagt gctagtgtag atcgctaata atcacactgg ctcaccttcg
841 ggtgggcctt tctgcgttta tatactagag agagaatata aaaagccaga ttattaatcc
901 ggctttttta ttatttGGTC TCGAAAAAAA ACGTGGCGCC CGAACAGGGA CGGATAGCTC
961 AGTCGGTAGA GCATCAGACT TTCGAGACGC TTGTG
//`
sequences.roligoFlipper = {}; sequences.roligoFlipper.name = "r_oligo Flipper" sequences.roligoFlipper.seqType = "both"; sequences.roligoFlipper.data = `LOCUS r_oligo_Flipper 3220 bp ds-DNA circular 02-SEP-2020 DEFINITION . FEATURES Location/Qualifiers
Biobricking 2111..2132
/label="BioBrick Prefix "
/ApEinfo_revcolor=#84b0dc
/ApEinfo_fwdcolor=#84b0dc
primer_bind 2043..2061
/label="pBRforEco"
/ApEinfo_revcolor=#85dae9
/ApEinfo_fwdcolor=#85dae9
BioBrick 2964..3009
/label="BBa_B0011"
/ApEinfo_revcolor=#c6c9d1
/ApEinfo_fwdcolor=#c6c9d1
BioBrick 2915..2955
/label="BBa_B0012"
/ApEinfo_revcolor=#b7e6d7
/ApEinfo_fwdcolor=#b7e6d7
misc_feature 1151..1151
/label="Point Mutation"
/ApEinfo_revcolor=#9eafd2
/ApEinfo_fwdcolor=#9eafd2
BioBrick 2915..3009
/label="BBa_B0014 (double terminator)"
/ApEinfo_revcolor=#85dae9
/ApEinfo_fwdcolor=#85dae9
gBlock 2111..3072
/label="gBlock A"
/ApEinfo_revcolor=#f58a5e
/ApEinfo_fwdcolor=#f58a5e
Scar 2956..2963
/label="BioBrick Scar"
/ApEinfo_revcolor=#9eafd2
/ApEinfo_fwdcolor=#9eafd2
CDS complement(1010..1870)
/label="AmpR"
/ApEinfo_revcolor=#b1ff67
/ApEinfo_fwdcolor=#b1ff67
BioBrick 2203..2908
/label="BBa_E1010 (RFP)"
/ApEinfo_revcolor=#b1ff67
/ApEinfo_fwdcolor=#b1ff67
stem_loop 2976..2998
/label="stem loop"
/ApEinfo_revcolor=#ff9ccd
/ApEinfo_fwdcolor=#ff9ccd
primer_bind 1633..1652
/label="Amp-R"
/ApEinfo_revcolor=#b4abac
/ApEinfo_fwdcolor=#b4abac
primer_bind complement(331..350)
/label="pBR322ori-F"
/ApEinfo_revcolor=#b4abac
/ApEinfo_fwdcolor=#b4abac
HIV-RT Binding Site 3017..3126
/label="C* HTBS"
/ApEinfo_revcolor=#faac61
/ApEinfo_fwdcolor=#faac61
terminator 2065..2108
/label="bacterial terminator"
/ApEinfo_revcolor=#ffef86
/ApEinfo_fwdcolor=#ffef86
stop 2878..2883
/label="double stop codon"
/ApEinfo_revcolor=#c6c9d1
/ApEinfo_fwdcolor=#c6c9d1
primer_bind complement(80..97)
/label="L4440"
/ApEinfo_revcolor=#75c6a9
/ApEinfo_fwdcolor=#75c6a9
Backbone join(3217..3220,1..2110)
/label="Mutated pSB1A3"
/ApEinfo_revcolor=#f58a5e
/ApEinfo_fwdcolor=#f58a5e
gBlock 3073..3216
/label="gBlock B"
/ApEinfo_revcolor=#85dae9
/ApEinfo_fwdcolor=#85dae9
Scar 2175..2182
/label="BioBrick Scar"
/ApEinfo_revcolor=#9eafd2
/ApEinfo_fwdcolor=#9eafd2
rep_origin complement(251..839)
/label="ori"
/ApEinfo_revcolor=#b1ff67
/ApEinfo_fwdcolor=#b1ff67
rbs 2190..2194
/label="strong RBS"
/ApEinfo_revcolor=#c7b0e3
/ApEinfo_fwdcolor=#c7b0e3
protein 2203..2908
/label="RFP"
/ApEinfo_revcolor=#faac61
/ApEinfo_fwdcolor=#faac61
Terminator 3127..3195
/label="B0054"
/ApEinfo_revcolor=#c6c9d1
/ApEinfo_fwdcolor=#c6c9d1
Biobricking 3196..3216
/label="BioBrick Suffix"
/ApEinfo_revcolor=#84b0dc
/ApEinfo_fwdcolor=#84b0dc
stop 2887..2892
/label="double stop codon"
/ApEinfo_revcolor=#75c6a9
/ApEinfo_fwdcolor=#75c6a9
promoter complement(1871..1975)
/label="AmpR promoter"
/ApEinfo_revcolor=#faac61
/ApEinfo_fwdcolor=#faac61
start 2203..2205
/label="start codon"
/ApEinfo_revcolor=#84b0dc
/ApEinfo_fwdcolor=#84b0dc
BioBrick 2183..2197
/label="BBa_B0030 (strong RBS)"
/ApEinfo_revcolor=#b4abac
/ApEinfo_fwdcolor=#b4abac
misc_feature 2183..3009
/label="From BBa_K3114015"
/ApEinfo_revcolor=#b7e6d7
/ApEinfo_fwdcolor=#b7e6d7
misc_feature 2133..2167
/label="BBa_J23105"
/ApEinfo_revcolor=#f58a5e
/ApEinfo_fwdcolor=#f58a5e
ORIGIN
1 cggcaaaaaa gggcaaggtg tcaccaccct gccctttttc tttaaaaccg aaaagattac
61 ttcgcgttat gcaggcttcc tcgctcactg actcgctgcg ctcggtcgtt cggctgcggc
121 gagcggtatc agctcactca aaggcggtaa tacggttatc cacagaatca ggggataacg
181 caggaaagaa catgtgagca aaaggccagc aaaaggccag gaaccgtaaa aaggccgcgt
241 tgctggcgtt tttccacagg ctccgccccc ctgacgagca tcacaaaaat cgacgctcaa
301 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct
361 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc
421 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg
481 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct
541 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag
601 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga
661 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga
721 agccagttac cttcggaaaa agagttggta gctcttgatc cggcaaacaa accaccgctg
781 gtagcggtgg tttttttgtt tgcaagcagc agattacgcg cagaaaaaaa ggatctcaag
841 aagatccttt gatcttttct acggggtctg acgctcagtg gaacgaaaac tcacgttaag
901 ggattttggt catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat
961 gaagttttaa atcaatctaa agtatatatg agtaaacttg gtctgacagt taccaatgct
1021 taatcagtga ggcacctatc tcagcgatct gtctatttcg ttcatccata gttgcctgac
1081 tccccgtcgt gtagataact acgatacggg agggcttacc atctggcccc agtgctgcaa
1141 tgataccgcg cgacccacgc tcaccggctc cagatttatc agcaataaac cagccagccg
1201 gaagggccga gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag tctattaatt
1261 gttgccggga agctagagta agtagttcgc cagttaatag tttgcgcaac gttgttgcca
1321 ttgctacagg catcgtggtg tcacgctcgt cgtttggtat ggcttcattc agctccggtt
1381 cccaacgatc aaggcgagtt acatgatccc ccatgttgtg caaaaaagcg gttagctcct
1441 tcggtcctcc gatcgttgtc agaagtaagt tggccgcagt gttatcactc atggttatgg
1501 cagcactgca taattctctt actgtcatgc catccgtaag atgcttttct gtgactggtg
1561 agtactcaac caagtcattc tgagaatagt gtatgcggcg accgagttgc tcttgcccgg
1621 cgtcaatacg ggataatacc gcgccacata gcagaacttt aaaagtgctc atcattggaa
1681 aacgttcttc ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc agttcgatat
1741 aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc gtttctgggt
1801 gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat aagggcgaca cggaaatgtt
1861 gaatactcat actcttcctt tttcaatatt attgaagcat ttatcagggt tattgtctca
1921 tgagcggata catatttgaa tgtatttaga aaaataaaca aataggggtt ccgcgcacat
1981 ttccccgaaa agtgccacct gacgtctaag aaaccattat tatcatgaca ttaacctata
2041 aaaataggcg tatcacgagg cagaatttca gataaaaaaa atccttagct ttcgctaagg
2101 atgatttctg gaattcgcgg ccgcttctag agtttacggc tagctcagtc ctaggtacta
2161 tgctagcCGA GACCtactag agattaaaga ggagaaatac taatggcttc ctccgaagac
2221 gttatcaaag agttcatgcg tttcaaagtt cgtatggaag gttccgttaa cggtcacgag
2281 ttcgaaatcg aaggtgaagg tgaaggtcgt ccgtacgaag gtacccagac cgctaaactg
2341 aaagttacca aaggtggtcc gctgccgttc gcttgggaca tcctgtcccc gcagttccag
2401 tacggttcca aagcttacgt taaacacccg gctgacatcc cggactacct gaaactgtcc
2461 ttcccggaag gtttcaaatg ggaacgtgtt atgaacttcg aagacggtgg tgttgttacc
2521 gttacccagg actcctccct gcaagacggt gagttcatct acaaagttaa actgcgtggt
2581 accaacttcc cgtccgacgg tccggttatg cagaaaaaaa ccatgggttg ggaagcttcc
2641 accgaacgta tgtacccgga agacggtgct ctgaaaggtg aaatcaaaat gcgtctgaaa
2701 ctgaaagacg gtggtcacta cgacgctgaa gttaaaacca cctacatggc taaaaaaccg
2761 gttcagctgc cgggtgctta caaaaccgac atcaaactgg acatcacctc ccacaacgaa
2821 gactacacca tcgttgaaca gtacgaacgt gctgaaggtc gtcactccac cggtgcttaa
2881 taacgctgat agtgctagtg tagatcgcta ataatcacac tggctcacct tcgggtgggc
2941 ctttctgcgt ttatatacta gagagagaat ataaaaagcc agattattaa tccggctttt
3001 ttattatttG GTCTCGAAAA AAAACGTGGC GCCCGAACAG GGACGGATAG CTCAGTCGGT
3061 AGAGCATCAG ACTTTTAATC TGAGGGTCCA GGGTTCAAGT CCCTGTTCGG GCGCCACGTT
3121 TTTTTTatta gcagaaagtc aaaagcctcc gaccggaggc ttttgactaa aacttccctt
3181 ggggttatca ttgggtacta gtagcggccg ctgcagagtc
//`