Difference between revisions of "Template:Virginia/scripts/seqsJS"

Latest revision as of 20:46, 25 October 2020

var currentSeq;

function disableScroll() {

 html=document.getElementsByTagName('html')[0];
 body=document.getElementsByTagName('body')[0];
 html.style.height = "200%";
 body.style.overflow = "hidden";
 body.style.height = "200%";  
 html.style.padding = "0px 10px 0px 0px"

}

function enableScroll() {

 html=document.getElementsByTagName('html')[0];
 body=document.getElementsByTagName('body')[0];
 html.style.height = "auto";
 body.style.overflow = "auto";
 body.style.height = "auto";
 html.style.padding = "0px"

}

fixSeqScroll = function(){

 //Remove Event Listener
 holder.removeEventListener("mouseover",fixSeqScroll);
 //Grab the plasmid viewer
 plasmidViewer = document.getElementsByClassName('la-vz-viewer-event-router')[0];
 //Disable page scroll on mouse over
 plasmidViewer.addEventListener("mouseover",disableScroll)
 //Re-Enable scroll when mouse leaves 
 plasmidViewer.addEventListener("mouseout",enableScroll)

}

//Takes a sequence object and exports it as a .gb file downloadSeq = function(seq){

 var blob = new Blob([seq.data],{ type: "text/plain;charset=utf-8" });
 saveAs(blob, seq.name+".gb");

}

//seqType takes values "linear", "circular", "both", or "both_flip" seqChange = function(seq){

 currentSeq = seq;
 document.getElementById("seqTitle").innerHTML = seq.name;
 seqViewer = document.getElementById('seqVizViewer');
 options =  {
   file: seq.data,
   style: {width: "100%", height: "100%"},
   copyEvent: (event => event.key === "c" && (event.metaKey || event.ctrlKey)),
   viewer: seq.seqType,
   showComplement: seq.comp
 }
 var viewer = seqviz.Viewer(seqViewer, options);
 viewer.render();

}

loadSeqViz = function(){

 pageSeq = window.location.search.split("?").pop();
 if (pageSeq in sequences){
   //Load sequence from queryString
   seqChange(sequences[pageSeq])
   //Prevent scrolling while mouse is over plasmid
   if(!mobileCheck()){
     holder = document.getElementById("seqVizViewer");
     holder.addEventListener("mouseover",fixSeqScroll);
   }
 }else{
   //Show error text
   errorText = document.getElementsByClassName('invalid')[0];
   console.log(errorText)
   errorText.style.visibility = "visible";
 }

}

mainCall = function(){

 //Add click event listener to download button
 document.getElementsByClassName('download')[0].addEventListener("click",function(){
   downloadSeq(currentSeq);
 })
 //Populate Sequence Table from sequeneces in sequences object
 table = document.getElementById("seqTable");
 Object.keys(sequences).forEach(function(key){
   seq = sequences[key];
   row = table.insertRow(-1);
   cell1 = row.insertCell(0);
   cell2 = row.insertCell(1);
   cell3 = row.insertCell(2);
   cell1.innerHTML = seq.name;
   cell2.seqData = seq; //Pass seq info to cell element so link can see it
   cell2.innerHTML = "<a onClick='window.location.search=this.parentElement.seqData.varName'>View</a>"
   cell3.seqData = seq; //Pass seq info to cell element so link can see it
   cell3.innerHTML = "<a onClick='downloadSeq(this.parentElement.seqData)'>Download</a>"
 })

} startupFunctions.push(mainCall)

//Make first function to run on page load startupFunctions.unshift(loadSeqViz)