Team:Estonia TUIT/Hardware

Team:Estonia_TUIT - 2020.igem.org

Overview

To provide ideal conditions for our constructed yeast our team decided to build a bioreactor. We have taken into account several aspects while designing it. For instance, Illumination conditions have to be strictly controlled to separate growth and production phases. Next, 30 °C must be maintained throughout the whole experiment. Moreover, the cells should be constantly mixed to provide equal illumination and supplementation throughout the culture. Our team successfully overcame these problems and constructed the Bioreactor “SANYA”.

3D Reactor

Our project about light-induced lipid production yeast strain was partially inspired by the work of prof. Guo. The researchers have built the prototype to prove the concept (Fig 1). We decided to make an improved version that would be able to keep the environment at a constant temperature, control lighting conditions and would have a built-in steering device to provide equal lightning and supplementation throughout the cell culture.

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Figure 1. Photograph of experimental setup (Guo et al., 2018)

We decided to make an improved version that would be able to keep the environment at a constant temperature, control lighting conditions and would have a built-in steering device to provide equal lightning and supplementation throughout the cell culture. After several design iterations, and the final version of the technical task was formulated:

  • constant temperature of 30 °C;
  • a flask with the culture needs to be isolated from the environment;
  • light sources with wavelengths of the light being 465 nm and 625 nm need to be placed 4 cm away from the flask;
  • a possibility to regulate light intensity;
  • speed of the steering needs to be kept in the 300-500 rpm range.

Thus, at the end of August, our engineering team started to work on the device – "SANYA" (Simple Assembly of Nano Yeast autoproduction).

Work was split into two parts: mechanics and electronics. The first was to design a light- impenetrable case, a flask mount, and steering blades. On the electronics side, the key parts were:

  • to make light intensity regulatable (using potentiometer)
  • to reduce motor speed (by lowering the operating voltage)
  • to monitor the temperature, operate the heater, and display the current temperature state (using Arduino, 4 thermistors, relay, and a segment display).

The final list of used components was:

  • Heater CV-H5
  • Tumblers SMTS202-2A1
  • Potentiometers R16148-1A-2-A1K and R16148-1A-2-B1K
  • 4 thermistors NTCC-22K
  • Arduino Uno Rev3
  • Relay Omron G3MB-202p
  • Segment display W110-LED
  • DC motor GA12-N20/12V2000RPM
  • Power supply PB009954
  • LED strip Blue PA030668
  • LED strip 70-982-PROL
  • 5mm thick plexiglass (sizes are on drawings)

After a couple of sleepless nights, broken fingers, and burnt hands, our cutting edge masterpiece of engineering was finished and given to the lab for some 72-hour long stress-test from the very beginning.

SCHEMATIC
GITHUB

References

Guo, J. et al. (2018) ‘Light-driven fine chemical production in yeast biohybrids’, Science. American Association for the Advancement of Science, 362(6416), pp. 813–816. doi: 10.1126/science.aat9777.