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Line 55:
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Line 68:
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Line 81:
Line 287:
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Line 92:
Line 298:
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Line 103:
Line 309:
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Line 114:
Line 320:
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Line 125:
Line 331:
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Line 136:
Line 342:
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Line 147:
Line 353:
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Line 158:
Line 364:
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Line 169:
Line 375:
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Line 180:
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Line 191:
Line 397:
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Line 207:
Line 424:
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Line 220:
Line 437:
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Line 254:
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id="tspan2577-8">Dr. Patrick Schröder</tspan></text>
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sodipodi:role="line">Integrated Human Practices</tspan></text>
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<a class="anchor" id="Enviroment"></a>
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<a class="anchor" id="Environment"></a>
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<h2>Enviroment</h2>
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<h2>Environment</h2>
<div>
<div>
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As a first step we needed to understand the general problem as good as possible. We contacted the German federal environment agency (UBA) as well as an ecotoxicologist to learn more about how micropollutants end up in the environment and what impact they have.
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As a first step, we needed to understand the general problem as good as possible. We contacted the German federal environment agency (UBA) as well as an ecotoxicologist to learn more about how micropollutants end up in the environment and what impact they have.
He is specialized in <b>biodegradation of pharmaceuticals</b> and the <b>development and spread of antimicrobial
He is specialized in <b>biodegradation of pharmaceuticals</b> and the <b>development and spread of antimicrobial
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resistances</b> in the environment.</li>
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resistance</b> in the environment.</li>
</ul>
</ul>
<br>
<br>
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</div>
</div>
<ul>
<ul>
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<li style="text-align:justify">He brought common mistakes in <b>disposal of pharmaceuticals</b> to our attention. In many regions in Germany
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<li style="text-align:justify">He brought common mistakes in the <b>disposal of pharmaceuticals</b> to our attention. In many regions in Germany,
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it is sufficient for them to be disposed of via household waste, but in others they must be returned to
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it is sufficient for them to be disposed of via household waste, but in others, they must be returned to
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designated collection facilities or pharmacies. In Germany, consumers can find out the correct disposal method on <I>arzenitmittelentsorgung.de</i></li>
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designated collection facilities or pharmacies. In Germany, consumers can find out the correct disposal method on <a href="https://arzneimittelentsorgung.de/home/" target="_blank">arzneimittelentsorgung.de</a></li>
<li style="text-align:justify">He also told us about <b>pharmaceuticals</b> that cause an <b>immense burden on the
<li style="text-align:justify">He also told us about <b>pharmaceuticals</b> that cause an <b>immense burden on the
environment</b> due to their high consumption such as <b>ibuprofen</b> and hormones like <b>estrogen</b>. These pose risk to
environment</b> due to their high consumption such as <b>ibuprofen</b> and hormones like <b>estrogen</b>. These pose risk to
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<ul>
<ul>
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<li style="text-align:justify">In order to bring the information about proper disposal of pharmaceuticals to the broader public,
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<li style="text-align:justify">To bring the information about the proper <a href="https://static.igem.org/mediawiki/2020/9/9d/T--TU_Darmstadt--How_to_properly_dispose_of_pharmaceutical_products.pdf" target="_blank">disposal of pharmaceuticals</a> to the broader public,
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we translated the <b>flyer from the German Environment Agency</b> into English, in
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we translated the <b>flyer from the German Environment Agency</b> into English, to increase the awareness of the general public internationally.</li>
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order to increase the awareness of the general public internationally.</li>
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<li style="text-align:justify">We also decided to take a closer look at the <b>degradation of estrogen and ibuprofen</b> by
<li style="text-align:justify">We also decided to take a closer look at the <b>degradation of estrogen and ibuprofen</b> by
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<b>laccases</b>. Since laccases also are able to transform both substances, we try to make our
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<b><a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Degradationofsubstances" target="_blank">laccases</a></b>. Since laccases also are able to transform both substances, we try to make our
<b>contribution</b> here.</li>
<b>contribution</b> here.</li>
<li style="text-align:justify">Our goal is to <b>educate the citizens</b>. If illness or symptoms exist, it is necessary
<li style="text-align:justify">Our goal is to <b>educate the citizens</b>. If illness or symptoms exist, it is necessary
to use pharmaceuticals in the process of recovery, but excessive consumption leads to environmental
to use pharmaceuticals in the process of recovery, but excessive consumption leads to environmental
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pollution and species extinction.[5]</li>
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pollution and species extinction<sup id="cite_ref-1"><a href="#cite_note-1">[1]</a></sup>.<br><br>
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For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.</li>
</ul>
</ul>
<br><br><br>
<br><br><br>
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</div>
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</div>
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<a class="anchor" id="Dr. Jörg Oehlmann"></a>
<div class="dropdownIntegrated" id="myButton2">Prof. Dr. Jörg Oehlmann</div>
<div class="dropdownIntegrated" id="myButton2">Prof. Dr. Jörg Oehlmann</div>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
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<ul>
<ul>
<li>
<li>
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We wanted to know more in detail how <b>micropollutants effect the aquatic world </b>in our waters. Therefore, we contacted Prof. Dr. Jörg Oehlmann. He has been Professor for <b>aquatic ecotoxicology</b> at the Goethe University in Frankfurt am Main since 2001.
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We wanted to know more about <b>micropollutants affecting the aquatic world </b>in our waters. Therefore, we contacted Prof. Dr. Jörg Oehlmann. He has been Professor for <b>aquatic ecotoxicology</b> at the Goethe University in Frankfurt am Main since 2001.
</li>
</li>
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<ul>
<ul>
<li style="text-align:justify">
<li style="text-align:justify">
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Prof. Oehlmann informed us about the evaluation of a substance toxicity and why harmful effects are difficult to prove.
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Prof. Oehlmann informed us about the evaluation of substance toxicity and why harmful effects are difficult to prove.
</li>
</li>
<li style="text-align:justify">
<li style="text-align:justify">
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Once again, he told us <b>how harmful Diclofenac (PNEC 50 ng/L) </b> is and that in a lot of waters in Germany the recommended <b>threshold values are exceeded. </b>
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Once again, he told us <b>how harmful diclofenac (PNEC 50 ng/L) </b> is and that in a lot of waters in Germany the recommended <b>threshold values are exceeded. </b>
</li>
</li>
<li style="text-align:justify">
<li style="text-align:justify">
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Additionally, he mentioned the negative effects of especially Carbamazepine, 17-alpha-ethynyl estradiol as well as endocrine disruptors such as Bisphenol A.
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Additionally, he mentioned the negative effects of especially <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Problematic Substances in Germany" target="_blank">carbamazepine, 17-alpha-ethynyl estradiol</a> as well as endocrine disruptors such as bisphenol A.
</li>
</li>
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With regard of our implementation, he drew attention to our <b>plastic based biofilm carriers</b>. Through them, we would <b>introduce plasticizers</b> as well as microplastics into the water. In addition, he made us aware of the <b>spatial limitation</b> municipal wastewater treatment plants (WWTP) have, which could make the inclusion of an additional clarifier for our biofilm impossible.
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Concerning our implementation, he drew attention to our <b>plastic-based biofilm carriers</b>. Through them, we would <b>introduce plasticizers</b> as well as microplastics into the water. In addition, he made us aware of the <b>spatial limitation</b> municipal wastewater treatment plants (WWTP) have, which could make the inclusion of an additional clarifier for our biofilm impossible.
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<li style="text-align:justify">
<li style="text-align:justify">
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We did a lot of research on the aforementioned substances and found that the laccases we use are already <b>able to degrade all of them</b> (Verlinkung zu "Degradation of Substances" bei pharmaceutical degradation). As a future outlook when we could possibly go in to the laboratory, we plan to test laccase activity in assays with those compounds.
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We did a lot of research on the aforementioned substances and found that the <b>laccases</b> we use are already <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Degradationofsubstances" target="_blank"><b>able to degrade all of them</b></a>. As a future outlook when we could go into the laboratory, we plan to test laccase activity in assays with those compounds.
</li>
</li>
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<li style="text-align:justify">
<li style="text-align:justify">
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Furthermore, we thought about <b>new strategies for implementation</b> of our project besides that of an additional clarifier. We want to avoid using plastic carriers and developed a system which <b>fits to the conditions in municipal WWTPs</b> as well. (Verlinkungen bei conditions in municipal WWTPs zu Alternative solution for different wastewater treatment plants" auf implementation seite. )
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Furthermore, we thought about <b>new strategies for the implementation</b> of our project besides that of an additional clarifier. We want to avoid using plastic carriers and developed a system which <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Wastewater%20Treatment%20Plants" target="_blank"><b>fits the conditions in municipal WWTPs</b></a> as well.<br><br>
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For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
<ul>
<ul>
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<li style="text-align:justify">Jörg Stülke is the <b>Head of the Department of General Microbiology</b>
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<li style="text-align:justify">Jörg Stülke is the <b>head of the Department of General Microbiology</b>
at the Institute of Microbiology and Genetics at the <b>University of Göttingen</b>. He is an
at the Institute of Microbiology and Genetics at the <b>University of Göttingen</b>. He is an
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<b>expert for <i>B. subtilis</i></b> and designed <b>a strain</b> where the <b>genes <i>sinR</i> and <i>tasA</i> are knocked out</b>
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<b>expert for <i>B. subtilis</i></b> and designed <b>a strain</b> that has got a<b> knockout of the genes <i>sinR</i> and <i>tasA</i></b>
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(GP1622).<sup id="cite_ref-N"><a href="#cite_note-1">[1]</a></sup> This strain would be
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(GP1622)<sup id="cite_ref-2"><a href="#cite_note-2">[2]</a></sup>. This strain would be
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useful for testing, if we could bring our enzymes as fusion proteins with TasA into the
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useful for testing if we could bring our enzymes as fusion proteins with TasA into the
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biofilm matrix. (Verlinkung Text TasA sinR knockout)</li>
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biofilm matrix (see <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Improvement_Biofilm" target="_blank">here</a>). </li>
</ul>
</ul>
<br>
<br>
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<h4 style="margin-left: 12px">What information did we gather?</h4>
<h4 style="margin-left: 12px">What information did we gather?</h4>
<ul>
<ul>
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<li style="text-align:justify">Besides <b>providing us the needed strain</b> GP1622, he agreed with
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<li style="text-align:justify">Besides <b>providing us with the needed strain</b> GP1622, he agreed with
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our assumption, that a knockout of sinR would not have any bad impacts on our biofilm.</li>
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our assumption, that a knockout of <i>sinR</i> would not have any negative impacts on our biofilm.</li>
</ul>
</ul>
<br>
<br>
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<h4 style="margin-left: 12px">Why did we talk to her?</h4>
<h4 style="margin-left: 12px">Why did we talk to her?</h4>
<ul>
<ul>
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<li style="text-align:justify"> Dr. Sabine Sané did her subsequent PhD studies at the <b>department of Microsystems Engineering at the University Freiburg</b> and investigated biotechnological approaches to regenerative energy systems. Among other things, her research also concentrated on the <b>degradation of micropollutants in wastewater</b>. Therefore, her work and experience with <b>laccases</b> made her a great asset for our project. Sané was interviewed by our friends from iGEM Kaiserslautern. <br>
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<li style="text-align:justify"> Dr. Sabine Sané did her subsequent PhD studies at the <b>Department of Microsystems Engineering at the University Freiburg</b> and investigated biotechnological approaches to regenerative energy systems. Among other things, her research also concentrated on the <b>degradation of micropollutants in wastewater</b>. Therefore, her work and experience with <b>laccases</b> made her a great asset for our project. Dr. Sané was interviewed by our friends from iGEM Kaiserslautern. <br>
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Sané mainly worked with the laccase of the fungus <i>Trametes versicolor</i>.
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Dr. Sané mainly worked with the laccase of the fungus <i>Trametes versicolor</i>.
</li>
</li>
</ul>
</ul>
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<h4 style="margin-left: 12px">What information did we gather?</h4>
<h4 style="margin-left: 12px">What information did we gather?</h4>
<ul>
<ul>
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<li style="text-align:justify">The <b>purification of laccases</b> is very <b>laborious and expensive</b>, which is why we would benefit from avoiding it. An ABTS assay can be used to detect the most efficient laccase concentration. </li>
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<li style="text-align:justify">The <b>purification of laccases</b> is very <b>laborious and expensive</b>. As a result we would benefit from avoiding it. An <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#ABTS" target="_blank">ABTS assay</a> can be used to determine the incubation period by measuring the degradation rate </li>
<li style="text-align:justify">The <b>degradation of estrogen via laccases</b> is theoretically possible and was proved successful with the laccase of <i>Trametes versicolor</i>. </li>
<li style="text-align:justify">The <b>degradation of estrogen via laccases</b> is theoretically possible and was proved successful with the laccase of <i>Trametes versicolor</i>. </li>
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<br>
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<li style="text-align:justify">The <b>pH optimum of the laccases</b> needs to be considered and the pH of the wastewater must eventually be adjusted accordingly. </li>
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<li style="text-align:justify">The <b>pH optimum of the laccases</b> needs to be considered and the pH value of the wastewater must eventually be adjusted accordingly. </li>
</ul>
</ul>
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<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<ul>
<ul>
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<li style="text-align:justify">We were able to gather information in the conversation with Dr. Sané, thanks to the framework of our partnership with iGEM Kaiserslautern and iGEM Stuttgart (als Link). As a result, all her input has helped us to acquire <b>more knowledge about the functionality of laccases</b>, like the <b>degradation of estrogen</b>, which is also a problem in wastewater (Verlinkung liste pharmis). For our experimental approach (verlinkung zu experiments) we can resort to her contribution. </li>
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<li style="text-align:justify">We were able to gather information in the conversation with Dr. Sané, thanks to the framework of our <a href="https://2020.igem.org/Team:TU_Darmstadt/Partnership" target="_blank">partnership with iGEM Kaiserslautern and iGEM Stuttgart</a>. As a result, all her input has helped us to acquire <b>more knowledge about the functionality of laccases</b>, like the <b>degradation of estrogen</b>, which is also a problem in wastewater (see <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Degradationofsubstances" target="_blank">here</a>). For our <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Experimentalapproach" target="_blank">experimental approach</a>, we can resort to her contribution. </li>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
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<br>
<ul>
<ul>
<li style="text-align:justify">PhD Yunrong Chai is an assistant professor at the <b>College of Science at the Northeastern University in Boston</b> and an <b>expert for microbial genomics and biofilm formation</b>.
<li style="text-align:justify">PhD Yunrong Chai is an assistant professor at the <b>College of Science at the Northeastern University in Boston</b> and an <b>expert for microbial genomics and biofilm formation</b>.
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<h4 style="margin-left: 12px">Which information did we gather?</h4>
<h4 style="margin-left: 12px">Which information did we gather?</h4>
<ul>
<ul>
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<li style="text-align:justify">Concerning our plan to <b>knockout the <i>sinR</i> gene</b> of our <i>B. subtilis</i> to simplify the induction of the biofilm formation,
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<li style="text-align:justify">Concerning our plan to <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Improvement_Biofilm" target="_blank"><b>knockout the <i>sinR</i> gene</b></a> of our <i>B. subtilis</i> to simplify the induction of the biofilm formation,
PhD Chai explained that this knockout will make our <b>biofilm more robust</b>.
PhD Chai explained that this knockout will make our <b>biofilm more robust</b>.
The effects on other properties of our <i>B. subtilis</i> and our biofilm should be minor. </li>
The effects on other properties of our <i>B. subtilis</i> and our biofilm should be minor. </li>
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<li style="text-align:justify">Endospores are not able to produce our degradation enzymes, which is why <b>preventing</b> sporulation of our <i>B. subtilis</i> would be useful.
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<li style="text-align:justify">Endospores are not able to produce our degradation enzymes, which is why <b>preventing</b> sporulation of our <i>B. subtilis</i> is a good idea.
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As the <b>sigma factor F (<i>σ<sup>F</sup></i>)</b> regulates genes associated with sporulation, he suggested a <b><i>sigF</i> knockout to avoid sporulation</b>.
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As the <b>sigma factor F (<i>σ<sup>F</sup></i>)</b> regulates genes associated with sporulation, he suggested a <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Obivation_Sporulation" target="_blank"><b><i>sigF</i> knockout</a> to avoid sporulation</b>.
PhD Chai predicted no impact on gene expression outside of sporulation. </li>
PhD Chai predicted no impact on gene expression outside of sporulation. </li>
<li style="text-align:justify">The combination of a <i>sigF</i> and <i>sinR</i> knockout would lead to a <i>B. subtilis</i> that can not sporulate and forms a more robust biofilm. </li>
<li style="text-align:justify">The combination of a <i>sigF</i> and <i>sinR</i> knockout would lead to a <i>B. subtilis</i> that can not sporulate and forms a more robust biofilm. </li>
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<li style="text-align:justify">A <b>fusion protein of the matrix protein TasA</b> with our enzymes would be a perfect way to <b>display the degradation enzymes</b> in the biofilm matrix.
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<li style="text-align:justify">A <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Fusion protein of TasA" target="_blank"><b>fusion protein of the matrix protein TasA</b></a> with our enzymes would be a perfect way to <b>display the degradation enzymes</b> in the biofilm matrix.
Because TasA is very abundant, many enzymes would be located in the matrix.
Because TasA is very abundant, many enzymes would be located in the matrix.
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Furthermore, he successfully generated fusion proteins of TasA with fluorescence proteins in his lab.</li>
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Furthermore, he already worked with fusion proteins of TasA with fluorescence proteins, which were originally made in Roberto Kolter’s lab (Harvard Medical School, Boston).</li>
<li style="text-align:justify">A <b>mixed biofilm</b> of different microorganisms could increase the robustness of our biofilm but would also complicate our assays and <b>would be an advanced step in your project.</b> </li>
<li style="text-align:justify">A <b>mixed biofilm</b> of different microorganisms could increase the robustness of our biofilm but would also complicate our assays and <b>would be an advanced step in your project.</b> </li>
</ul>
</ul>
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<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<ul>
<ul>
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<li style="text-align:justify">We continued planning our <b>fusion proteins with TasA</b> and the <b>knockout of <i>sinR</i></b>. Additionally, we integrated the <b>knockout of <i>sigF</i></b> into our project to avoid sporulation of our <i>B. subtilis</i>. </li>
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<li style="text-align:justify">We continued planning our <b>fusion proteins with TasA</b> and the <b>knockout of <i>sinR</i></b>. Additionally, we integrated the <b>knockout of <i>sigF</i></b> into our project to avoid sporulation of our <i>B. subtilis</i>. (See <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Biofilm Engineering"target="_blank">Biofilm Engineering</a> for more information.) </li>
<li style="text-align:justify">Dr. Dietmar Schlosser is <b>group leader for Environmental Mycology in the Department of Environmental Microbiology</b> at the Helmholtz Centre for Environmental Research in Leipzig.
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<li style="text-align:justify"> Dr. Dietmar Schlosser is <b>group leader of the Environmental Mycology Research Group in the Department of Environmental Microbiology</b>, Helmholtz Centre for Environmental Research – UFZ in Leipzig.
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Although he is more of an expert for fungal laccases, we still considered his <b>experience with laccases</b> in general as valuable.
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Although he is more of an expert for fungal laccases, we still considered his <b>experience with laccases</b> in general as valuable.
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All given answers and input from below were gathered from the interview protocol provided by <a href="https://2020.igem.org/Team:TU_Kaiserslautern" target="_blank">iGEM Kaiserslautern</a> since they spoke directly with Dr. Schlosser and offered to ask our question in collaboration</li>
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All given answers and input from below were gathered from the interview protocol provided by <a href="https://2020.igem.org/Team:TU_Kaiserslautern">iGEM Kaiserslautern</a>,
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since they spoke directly with Dr. Schlosser and offered to ask our question in collaboration</li>
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<li style="text-align:justify">Dr. Schlosser has confirmed the <b>native function of laccases</b>: their <b>ability to detoxify</b>. In fungal laccases that reaction leads to the formation of alkaline compounds. </li>
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<li style="text-align:justify">Dr. Schlosser has confirmed one (among other) <b>native functions of laccases</b>: their <b>ability to detoxify</b>. <b>Polymeric products frequently arising from laccase-catalyzed oxidation</b> of toxic (or otherwise biologically active) compounds are often <b>biologically inactive</b>. </li>
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<li style="text-align:justify">The laccase has a <b>poor water solubility</b>. </li>
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<li style="text-align:justify">The <b>reaction time of an ABTS assay</b> to determine the most efficient laccase concentration <b>can range from a
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<li style="text-align:justify">Using discontinuous fungal cultures, <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#ABTS" target="_blank">ABTS assays</a></b> can be employed to determine the time point of <b>maximal laccase activity</b>. Typically, this is observed over a <b>range of a few days up to several weeks</b>. As the <b>optimal assay concentration</b> of ABTS, he recommended <b>1-2 mM</b>. </li>
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few days up to two weeks</b>. As <b>optimal concentration</b> of ABTS he recommended <b>2 mM</b>. </li>
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<li style="text-align:justify">To <b>monitor the degradation</b> of the starting materials, Dr. Schlosser uses the method of <b>UHPLC coupled with MS/MS</b> in his research. </li>
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<li style="text-align:justify">To <b>monitor the oxidation</b> of parent compounds, Dr. Schlosser uses <b>UHPLC coupled with either DAD or MS/MS</b> detection. </li>
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<li style="text-align:justify">The <b>public opinion on GMOs</b> reveals a <b>dread of unprecedented affects</b> but an <b>acceptance</b> when used for <b>medicinal applications</b>. </li>
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<li style="text-align:justify">He investigates the <b>toxicity</b> of products by means of <b>bacterial inhibition tests</b>, which provide an <b>EC<sub>50</sub> value</b>. </li>
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<li style="text-align:justify">He has also investigated the <b>toxicity</b> of products by means of <b>bacterial inhibition tests</b>, which provide <b>EC<sub>50</sub> values</b>. </li>
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<li style="text-align:justify">The information we gained from the conversation with Dietmar Schlosser within the framework of our
+
<li style="text-align:justify">The information we gained from the conversation with Dr. Schlosser within the framework of our
−
<b> <a href="https://2020.igem.org/Team:TU_Darmstadt/Partnership">partnership</a> with <a href="https://2020.igem.org/Team:TU_Kaiserslautern">iGEM Kaiserslautern</a> and <a href="https://2020.igem.org/Team:Stuttgart">iGEM Stuttgart</a></b> has helped us to develop <b>further understanding for working with laccases</b>.
+
<b> <a href="https://2020.igem.org/Team:TU_Darmstadt/Partnership" target="_blank">partnership</a> with <a href="https://2020.igem.org/Team:TU_Kaiserslautern" target="_blank">iGEM Kaiserslautern</a> and <a href="https://2020.igem.org/Team:Stuttgart" target="_blank">iGEM Stuttgart</a></b> has helped us to develop a <b>further understanding of working with laccases</b>.
−
In our experimental planning we can resort to the bundled knowledge we have collected,
+
In our experimental planning, we can resort to the bundled knowledge we have collected,
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In correspondence to his toxicity assessments, we are <b>confirmed in our <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Experimental Approach">experimental approach</a></b>.
+
In correspondence to his toxicity assessments, we are <b>confirmed in our <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Experimental Approach" target="_blank">experimental approach</a></b>.
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For implementation of our project, not only we got in touch with several wastewater treatment plants, but also visited one ourselves. Furthermore, we talked to a professor who already works on using biofilms in WWTPs and obtained useful information how our biofilm could be implemented. We asked questions to the German Environment Agency for Consumer Protection and Food Safety about the legal situation of GMOs.
+
For the implementation of our project, we did not only get in touch with several WWTPs but also visited one ourselves. Furthermore, we talked to a professor who already works on using biofilms in WWTPs and obtained useful information on how our biofilm could be implemented. We submitted questions to the German Environment Agency for Consumer Protection and Food Safety about the legal situation of GMOs.
<h4 style="margin-left: 12px">Why did we talk to her?</h4>
<h4 style="margin-left: 12px">Why did we talk to her?</h4>
<ul>
<ul>
−
<li style="text-align:justify"> Professor Dr. Lackner is the <b>head of the department for sewage management at the TU
+
<li style="text-align:justify"> Professor Dr. Lackner is the <b>head of the Chair of Wastewater Engineering at the TU
−
Darmstadt</b> since 2016. She is known for her work with <b>microbial communities</b> regarding <b>wastewater
+
Darmstadt</b> since 2016. She is known for her work on <b>microbial communities</b> for <b>wastewater
−
purification</b> in Germany, but also abroad, which is why an interview with her was of great
+
treatment</b> in Germany, but also abroad, which is why an interview with her was of great
interest for us. More so compelling was the fact that she has significant experience with the
interest for us. More so compelling was the fact that she has significant experience with the
−
<b>degradation of harmful pharmaceutical residues</b>.</li>
+
<b>reduction of harmful pharmaceutical residues</b>.</li>
</ul>
</ul>
<br>
<br>
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<ul>
<ul>
−
<li style="text-align:justify">Prof. Lackner told us about possible complications regarding <b>GMOs
+
<li style="text-align:justify">Prof. Lackner told us about possible complications regarding <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#GMOs%20in%20Wastewater%20Treatment" target="_blank">GMOs
−
in wastewater treatment plants</b> and the difficulties surrounding this topic. She could
+
in WWTPs</a></b> and the difficulties surrounding this topic. She could
confirm the danger <b>pharmaceuticals</b> pose in wastewater, among them diclofenac, as she has
confirm the danger <b>pharmaceuticals</b> pose in wastewater, among them diclofenac, as she has
−
been working on its degradation herself.</li>
+
been working on its removal herself.</li>
−
<li style="text-align:justify">Hence, she was able to assure us that an <b>oxidation of diclofenac</b>
+
<li style="text-align:justify">Hence, she was able to assure us that <b>oxidation of diclofenac</b>
was more than possible – as this has already been done. For this, it was even more helpful
was more than possible – as this has already been done. For this, it was even more helpful
−
that she sent us continuative literature regarding diclofenac, as one of her Ph.D. students
+
that she sent us continuative literature regarding diclofenac, as one of her PhD. students
−
has worked on degrading the substance.</li>
+
has worked on removing this substance.</li>
<li style="text-align:justify">When asked about other harmful substances, Prof. Lackner
<li style="text-align:justify">When asked about other harmful substances, Prof. Lackner
−
mentioned <b>ibuprofen and carbamazepine</b> as well as others.</li>
+
mentioned <b>ibuprofen and <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Problematic Substances in Germany" target="_blank">carbamazepine</a></b> as well as others.</li>
<li style="text-align:justify">Due to her vast experience, she also gave us immense input
<li style="text-align:justify">Due to her vast experience, she also gave us immense input
−
regarding a <b>carrier material for our biofilm</b> and told us about the most efficient
+
regarding a <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Implementation of B-TOX and Biofilm Carriers" target="_blank">carrier material</a> for our biofilm</b> and told us about the most efficient
environmental conditions.</li>
environmental conditions.</li>
</ul>
</ul>
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<ul>
<ul>
<li style="text-align:justify">She did not only confirm the alarming toxicity of diclofenac and
<li style="text-align:justify">She did not only confirm the alarming toxicity of diclofenac and
−
that there is a need of a project idea like ours, but also pointed us in the direction of
+
that there is a need for a project idea like ours, but also pointed us in the direction of
<b>searching for other substances like carbamazepine</b>.</li>
<b>searching for other substances like carbamazepine</b>.</li>
<li style="text-align:justify">Her willingness to be at our disposal regarding literature or
<li style="text-align:justify">Her willingness to be at our disposal regarding literature or
−
information about diclofenac and wastewater purification made her a great asset for our
+
information about diclofenac and wastewater treatment made her a great asset for our
project. Thanks to her, and her research group, we were able to get crucial information
project. Thanks to her, and her research group, we were able to get crucial information
on how and to which extent <b>diclofenac can be oxidized by laccases</b>.</li>
on how and to which extent <b>diclofenac can be oxidized by laccases</b>.</li>
<li style="text-align:justify">Since we were undecided on which <b>carrier material</b> we should apply
<li style="text-align:justify">Since we were undecided on which <b>carrier material</b> we should apply
−
for our <b>biofilm</b>, her recommendation of the ones she uses and the offer to provide us with
+
for our <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm" target="_blank">biofilm</a></b>, her recommendation of the ones she uses and the offer to provide us with
−
them has meant a great deal for the thrive of our project.</li>
+
them has meant a great deal for the thriving of our project. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.</li>
</ul>
</ul>
−
<br>
+
−
For a more detailed review on her input, please CLICK HERE.
<div class="dropdownIntegrated" id="myButton8">Dipl. Ing. Udo Bäuerle</div>
<div id="text8" class="dropdownheadtext">
<div id="text8" class="dropdownheadtext">
−
<li style="text-align:justify">Already in the early phase of our project we knew that wastewater treatment plants would (WWTPs) be the main users of our project.
+
−
Therefore, we had to find an expert who can introduce us into the purification stages and <b>help us to find the best way to implement our biofilm</b>.
+
<div class="containerimg" id=Chapter2>
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Udo Bäuerle <b>studied construction engineering</b> and <b>focused on water management</b> as well as on <b>wastewater treatment</b>. With his company B&P Beratende Ingenieure he constructed a lot of WWTPs. </li>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
+
<ul>
+
<li style="text-align:justify">In the early phase of our project, we already knew that WWTPs would be the main users of our project.
+
Therefore, we had to find an expert who could introduce us into the purification stages and <b>help us find the best way to implement our biofilm</b>.
+
Udo Bäuerle <b>studied construction engineering</b> and <b>focused on water management</b> as well as <b>wastewater treatment</b>. With his company B&P Beratende Ingenieure, he constructed a lot of WWTPs. </li>
</ul>
</ul>
<br>
<br>
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<li style="text-align:justify">He told us about the reoccurring problems associated with commonly used procedures like ozonolysis and the use of active carbon.</li>
<li style="text-align:justify">He told us about the reoccurring problems associated with commonly used procedures like ozonolysis and the use of active carbon.</li>
<li style="text-align:justify">Udo Bäuerle assured us that a project like ours would be really helpful and advised us to implement our system in an <b>additional
<li style="text-align:justify">Udo Bäuerle assured us that a project like ours would be really helpful and advised us to implement our system in an <b>additional
−
clarifier as fourth purification step</b>. Our engineered <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#final Bacillus Subtilis"><i>Bacillus subtilis</i></a> probably will not survive in the activated sludge
+
clarifier as a <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Alternative solution for different wastewater treatment plants" target="_blank">fourth purification step</a></b>. Our engineered <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#final Bacillus Subtilis" target="_blank"><i>B. subtilis</i></a> probably will not survive in the activated sludge
clarifier which is the second purification step.</li>
clarifier which is the second purification step.</li>
−
<li style="text-align:justify">Udo Bäuerle was the first person to mention <b>rotating disc filters</b> on which our biofilm could grow on and could be implemented into the WWTP. </li>
+
<li style="text-align:justify">Udo Bäuerle was the first person to mention <b>rotating disc filters</b> on which our biofilm could grow on and could be <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Implementation of B-tox and Biofilm Carriers" target="_blank">implemented into the WWTP</a>. </li>
</ul>
</ul>
<br>
<br>
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<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<ul>
<ul>
−
<li style="text-align:justify">On this basis we were able to discuss our project with plant managers of our local WWTPs.
+
<li style="text-align:justify">On this basis, we were able to discuss our project with plant managers of local WWTPs.
−
We did research about the diving bodies and after discussing this idea with other experts we finally <b>came to the <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Implementation of B-tox and Biofilm Carriers">biofilm carriers</a></b> we want to use. </li>
+
We did research about the diving bodies and after discussing this idea with other experts we finally <b>came to the <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Implementation of B-tox and Biofilm Carriers" target="_blank">biofilm carriers</a></b> we want to use. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
+
<ul>
+
<li style="text-align:justify">Florian Heyn occupies a <b>management position for the WWTP in Alzenau</b> and is mainly responsible for organizational decisions. </li>
+
</ul>
+
<br>
+
+
<h4 style="margin-left: 12px">Which information did we gather?</h4>
+
<ul>
+
<li style="text-align:justify">Heyn explained to us that <b>micropollutants</b> such as drug residues are a <b>well-known problem</b> and that "filtering out these substances is only possible to a limited extent or not at all, or only at great expense", which further confirms the relevance of our project. </li>
+
<li style="text-align:justify">He also considers the use of <b>biofilm carriers</b> as a platform for the formation of our biofilm to be possible. For the first testing, Heyn told us about special <b>test basins</b> called IBCs (Intermediate Bulk Containers), which have a volume of about 1 m<sup>3</sup>. </li>
+
<li style="text-align:justify">It is crucial to secure that GMOs do not get into the environment as they can bring great harm to natural species. Therefore, the safety option Heyn suggested is <b>treatment with UV light</b> or an agitator that could kill the microorganisms mechanically. </li>
+
</ul>
+
<br>
+
+
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
+
<ul>
+
<li style="text-align:justify">His input inspired us to think more in detail about <b>safety aspects</b> and because this is such an important topic for the final implementation of our project, we started to develop a biological security system using a newly designed <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch" target="_blank">kill switch</a>. </li>
+
<li style="text-align:justify">Heyn stressed that it depends particularly on <b>costs, use, safety and economy</b>, whether our project is useful enough for the final integration. As a result, we spent more time thinking about how our project can be perfectly adapted to the specifications and guidelines of WWTPs. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
−
<br>
+
<ul>
<ul>
−
<li style="text-align:justify">In order to implement our biofilm into wastewater treatment plants (WWTP) we have to deal with legal requirements in Germany.
+
−
Therefore, the team from <a href="https://2020.igem.org/Team:TU_Kaiserslautern">Kaiserslautern</a> had the idea to contact Dr. Ulrich Ehlers from the <b>Federal Office for Consumer Protection and Food Safety (BVL)</b> and since we are <a href="https://2020.igem.org/Team:TU_Darmstadt/Partnership">working close together</a>, we were able to ask him a few questions. He has been the head of the "release and placing on the market" section in the BVL’s "Genetic Engineering" department. </li>
+
<li style="text-align:justify">To implement our biofilm into WWTPs, we have to deal with legal requirements in Germany.
+
Therefore, the iGEM team <a href="https://2020.igem.org/Team:TU_Kaiserslautern" target="_blank">Kaiserslautern</a> had the idea to contact Dr. Ulrich Ehlers from the <b>Federal Office for Consumer Protection and Food Safety (BVL)</b> and since we are <a href="https://2020.igem.org/Team:TU_Darmstadt/Partnership" target="_blank">working closely together</a>, we were able to ask him a few questions. He has been the head of the "release and placing on the market" section in the BVL’s "Genetic Engineering" Department. </li>
</ul>
</ul>
<br>
<br>
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<h4 style="margin-left: 12px">Which information did we gather?</h4>
<h4 style="margin-left: 12px">Which information did we gather?</h4>
<ul>
<ul>
−
<li style="text-align:justify">A distinction is made between content use and work outside a closed system.
+
<li style="text-align:justify">A distinction is made between content use and works outside a closed system.
−
The latter is divided into <b>“release” and “placing on the market”</b>. Both of them are <b>no applicable options</b>for our project. (See more -->here[link zu langen Versionen])</li>
+
The latter is divided into <b>“release” and “placing on the market”</b>. Both of them are <b>no applicable options </b>for our project. (See more --><a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>)</li>
−
+
<li style="text-align:justify">For our project, he recommended content use with <b>measures to ensure the biofilm is not leaving the WWTP</b>.
<li style="text-align:justify">For our project, he recommended content use with <b>measures to ensure the biofilm is not leaving the WWTP</b>.
−
The treatment plant in which we would implement our project would then have to be classified as a <b>“genetic engineering plant”</b> by the local state authorities. </li>
+
WWTPs where we would implement our project would then have to be classified as a <b>“<a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#GMOs in Wastewater Treatment" target="_blank">genetic engineering plant</a>”</b> by the local state authorities. </li>
</ul>
</ul>
<br>
<br>
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
−
<br>
<ul>
<ul>
−
<li style="text-align:justify">Now we do know whom we have to <b>contact</b>, if we plan to <b>implement our system</b> into the first WWTP. We have also put our focus more on <b>creating a system that enables working in content use</b> and getting a WWTP classified as genetic engineering plant. Besides various efforts we designed a kill switch. </li>
+
<li style="text-align:justify">Now we do know whom we have to <b>contact</b> if we plan to <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation" target="_blank">implement our system</a></b> into the first WWTP. We have also put our focus more on <b>creating a system that enables working in content use</b> and getting a WWTP classified as genetic engineering plant. Besides various efforts, we designed a <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch" target="_blank">kill switch</a>. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.</li>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
+
<ul>
+
<li style="text-align:justify">Thomas Seeger is part of the <b>management team</b> of the Weiterstadt <b>WWTP</b>. He is responsible for employee safety and organizational activities. </li>
+
</ul>
+
<br>
+
+
<h4 style="margin-left: 12px">Which information did we gather?</h4>
+
<ul>
+
<li style="text-align:justify">Seeger told us that there are already technical attempts to treat difficult-to-degrade substances in the final purification process, but this so-called <b>“<a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Costs for current procedures" target="_blank">fourth purification stage</a>” is very expensive</b> to be installed. In his opinion, this is an important reason for the necessity of our project. </li>
+
<li style="text-align:justify">He spoke to us about the competition between the native microorganisms of the biological purification stage and our genetically modified organism and recommended that we should consider a <b>further, separate purification stage</b> for the integration of the module. </li>
+
<li style="text-align:justify">When we asked about <b>employee protection</b>, Seeger mentioned that WWTP workers are already receiving regular <b>safety instructions</b> and that basic biological knowledge is also passed on to the workers in the corresponding training, before they start to work in the WWTP. </li>
+
</ul>
+
<br>
+
+
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
+
<ul>
+
<li style="text-align:justify">His valuable input encouraged us to focus on a <b>separate purification stage</b> in the <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation" target="_blank">integration part of our project</a>. </li>
+
<li style="text-align:justify">Employee safety is a key aspect that needs to be taken seriously. This led us to create a <b>safety form</b> about <a href="https://2020.igem.org/Team:TU_Darmstadt/Safety/How_To_Handle_B-Tox" target="_blank">how to handle our biofilm</a> which can be used by future users, especially the responsible persons as well as the workers of the WWTPs. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li>
+
</ul>
+
<br>
+
</div>
</div>
−
+
<a class="anchor" id="Visit of Wastewater Treatment Plants"></a>
−
<div class="dropdownIntegrated" id="myButton12">Visit of a Wastewater Treatment Plant</div>
+
<div class="dropdownIntegrated" id="myButton12">Visit of Wastewater Treatment Plants</div>
<div id="text12" class="dropdownheadtext">
<div id="text12" class="dropdownheadtext">
−
<h4 style="margin-left: 12px">Visit of a WWTP</h4>
+
<h4 style="margin-left: 12px">Visit of a WWTP in Darmstadt, Germany</h4>
−
<br>
+
<div class="TFcontainer">
+
<div class="containertext" id=Chapter1 >
+
<ul>
<ul>
−
<li style="text-align:justify"> Since our project is to be integrated into wastewater treatment plants in the future, we wanted
+
<li style="text-align:justify"> Since our project is to be integrated into WWTPs in the future, we wanted
−
to have a <b>first-hand look</b> at such a plant. For that, we visited the <b>wastewater treatment plant
+
to have a <b>first-hand look</b> at such a WWTP. For that, we visited the <b>WWTP
−
from ENTEGA in Darmstadt</b>. This visit gave us the opportunity to see by ourselves how wastewater
+
from ENTEGA in Darmstadt</b>. This visit allowed us to see by ourselves how wastewater
treatment can work and which steps are necessary to achieve a clean outcome. We learned how
treatment can work and which steps are necessary to achieve a clean outcome. We learned how
−
different waste water treatment plants can be and how differently they have to deal with new
+
different WWTPs can be and how differently they have to deal with new
−
guidelines concerning the quality of the treated wastewater. The wastewater treatment plant in
+
guidelines concerning the quality of the treated wastewater. The WWTP in
−
Darmstadt is built of a <b>primary treatment clarifier</b>, followed by a <b>biological wastewater
+
Darmstadt is built of a <b>primary treatment clarifier</b>, followed by <b>biological wastewater
treatment</b> and a <b>final clarifier</b>.
treatment</b> and a <b>final clarifier</b>.
<br>
<br>
For the <b>implementation of our biofilm</b>, a new clarifier for an additional purification stage
For the <b>implementation of our biofilm</b>, a new clarifier for an additional purification stage
−
would be necessary in the mentioned wastewater treatment plant. <b>Space for another tank in this
+
would be necessary for the mentioned WWTP. <b>Space for another tank in this
−
plant is available</b> but we have to consider that especially wastewater treatment plants in
+
plant is available</b> but we have to consider that especially WWTPs in
bigger cities wouldn’t have enough space for this. Considering this issue, we thought about
bigger cities wouldn’t have enough space for this. Considering this issue, we thought about
−
different options to implement our project (link Biofilm in chemischer Stufe, Filmis). </li>
+
different options to <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation" target="_blank">implement our project</a>. </li>
<figcaption id="Figure">Visit of the WWTP in Darmstadt </figcaption>
+
</figure>
+
</div>
+
</div>
+
+
<br>
+
+
<h4 style="margin-left: 12px">Visit of a WWTP in Archbold, Ohio</h4>
+
<ul>
+
<li style="text-align:justify">
+
+
Wastewater treatment is a global problem. In our project, we do not only aim for implementation
+
in WWTPs in Germany but also in other countries. Therefore, it
+
is important to look into the structure of <b>WWTPs around the globe</b>. Our partnership with the
+
<a href="https://2020.igem.org/Team:TU_Kaiserslautern" target="_blank">iGEM team from Kaiserslautern</a> enabled us to
+
get into contact with Mike Short and Dan Avers from the WWTP in Archbold, Ohio. Dan Avers is a water
+
distribution chief and Mike Short is a wastewater superintendent. </li>
+
+
<li style="text-align:justify">We found out that there are <b>five different classes of plants</b> in the United States, ranging
+
from one to five with five being the highest. The higher the class, the bigger the plant and
+
the amount of water purified daily. In addition, more and more complex purification stages are
+
installed with increasing class<sup id="cite_ref-3"><a href="#cite_note-3">[3]</a></sup>. The WWTP in Archbold belongs to class three with a 2.5 MGD
+
(million gallons per day) design flow. It contains bacterial sewage sludge as a secondary treatment
+
in seven aeration tanks with two settling tanks installed behind. The effluents from those tanks
+
are treated with chlorine to kill pathogenic organisms. Sodium chloride is used to remove any
+
remaining chlorine before the effluent flows into the Brush Creek<sup id="cite_ref-4"><a href="#cite_note-4">[4]</a></sup>. Mr. Short told us that
+
they do <b>not measure the concentration of micropollutants</b> in the incoming wastewater as it is
+
done in the WWTP we visited in Darmstadt, Germany. Instead, there is mandatory annual testing
+
by the state. He told us that as far as he knows <b>no federal laws or regulations <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#GMOs%20in%20Wastewater%20Treatment" target="_blank"> prohibiting
+
the use of GMOs in WWTPs</a></b>. But the decision whether GMOs are allowed is still up to the Environmental
+
Protection Agency (EPA).</li>
+
+
<li style="text-align:justify">Another key factor is <b>funding</b>. As WWTPs are always being redesigned and new components are added
+
there is a need for financial security. Therefore, costs for the installation and operation of our
+
project <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#GMOs%20in%20Wastewater%20Treatment" target="_blank">have been estimated</a> and it has been shown that the <b>use of
+
"B-TOX" is cheaper than currently available methods</b> for removing micropollutants from wastewater.
+
Besides, the fact that the WWTPs are constantly redesigned benefits us. The implementation if
+
"B-TOX" can be combined with normal refurbishments or other new installations. Making it easily
+
implementable and also easy to remove from the system. </li>
+
+
<li style="text-align:justify">By this WWTP tour, we learned more about the differences that exist between WWTPs around the world.
+
Understanding the different types and classes of WWTPs helped us to think about an <b>implementation
+
strategy</b> that fits for many different plants and reminded us that it would be good to think about
+
<a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Alternative solution for different wastewater treatment plants" target="_blank">alternative approaches</a>. </li>
+
+
</ul>
<br>
<br>
</div>
</div>
+
+
<a class="anchor" id="Ralf_Moeller"></a>
+
<div class="dropdownIntegrated" id="myButton16">Prof. Dr. Ralf Möller</div>
<li>Prof. Dr. Ralf Möller is the head of the <b>Aerospace Microbiology</b> group at the <b>German Aerospace Center (DLR)</b> in Cologne. </li>
+
<li>He is also a professor of <b>Space Microbiology</b> at the Bonn-Rhein-Sieg University of Applied Sciences.</li>
+
<li>Prof. Dr. Möller has almost <b>20 years of experience with biofilms</b> and especially with <I>B. subtilis</I>. </li>
+
</ul>
+
<br>
+
+
<div class="headline">
+
<h4 style="margin-left: 12px">
+
Which information did we gather?
+
</h4>
+
</div>
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<ul>
+
<li style="text-align:justify"><b>Overexpressing a TasA enzyme fusion protein</b> in <I>B. subtilis</i> could not only be used for wastewater treatment on earth but also for <b>biomining so-called rare earth elements</b>, especially for the later application in the field of <b>asteroid mining</b>. </li>
+
<li style="text-align:justify">To be able to <b>purify wastewater with the "B-TOX" system e.g. on a space station</b>, the stability of our biofilm would have to be increased. This is necessary because <b>biofilms behave differently in space than they do on earth</b> due to the equal distribution of liquids in space. </li>
+
<li style="text-align:justify">Our kill switch is a good method to ensure biocontainment. </li>
+
<br>
+
</ul>
+
<div class="headline">
+
<h4 style="margin-left: 12px">
+
How did we adjust our project?
+
</h4>
+
</div>
+
<ul>
+
+
<li style="text-align:justify">Prof. Dr. Möller inspired us to <b>broaden our horizon</b> and to look into the <b>implementation of our biofilm in space</b>. (Biofilm in space as link) </li>
+
<li style="text-align:justify">Furthermore, he <b>encouraged us in the development of our <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch" target="_blank">kill switch</a></b>, as he thinks it is of great interest to be able to <b>make the growth rate of the biofilm dependent</b> on certain situations or desired environments. <br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.</li>
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It’s really important for us to shape our research responsible and think of ethical aspects of our project. We talked about this with professors for philosophy and a member of the ethic commission of our university.
+
It’s really important for us to shape our research responsible and think of the ethical aspects of our project. We talked about this with professors for philosophy and a member of the ethic commission of our university.
<h4 style="margin-left: 12px">Why did we talk to her?</h4>
<ul>
<ul>
<li style="text-align:justify">Prof. Dr. Sibylle Gaisser is a <b>professor for industrial biotechnology</b> and her field of teaching includes bioethics among other
<li style="text-align:justify">Prof. Dr. Sibylle Gaisser is a <b>professor for industrial biotechnology</b> and her field of teaching includes bioethics among other
−
subjects at the University of Applied Sciences Ansbach. Whereas her field of research consists of Synthethic Biology and antibiotics-biosynthesis,
+
subjects at the University of Applied Sciences Ansbach. Whereas her field of research consists of Synthetic Biology and antibiotics-biosynthesis,
her research about <b>socio-economic analyses</b> and <b>technology assessment in life sciences</b> was of great interest to us. </li>
her research about <b>socio-economic analyses</b> and <b>technology assessment in life sciences</b> was of great interest to us. </li>
</ul>
</ul>
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such as that there would come <b>no harm to the public or non-beneficiaries</b>,
such as that there would come <b>no harm to the public or non-beneficiaries</b>,
that we would provide accessibility to all, preserve the environment and protect all wildlife with our project. </li>
that we would provide accessibility to all, preserve the environment and protect all wildlife with our project. </li>
−
<li style="text-align:justify">In the case of an implementation of our project idea into WWTPs,
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<li style="text-align:justify">In the case of an <a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation" target="_blank">implementation</a> of our project idea into WWTPs,
−
we would have to prove that <b>private households pose to be the primary source of wastewater pollution</b> in order to
+
we would have to prove that <b>private households pose to be the primary source of wastewater pollution</b> to
justify possible tax increases. This way, we would employ the <b>polluter-pays principle</b>. </li>
justify possible tax increases. This way, we would employ the <b>polluter-pays principle</b>. </li>
−
<li style="text-align:justify">She advised us to <b>always ensure a closed system</b>, when it comes to the application of GMOs. In addition,
+
<li style="text-align:justify">She advised us to <b>always ensure a closed system</b> when it comes to the application of GMOs. In addition,
−
we should provide a <b>physical containment</b> as well in order to prevent a break out of bacteria.
+
we should provide a <b>physical containment</b> as well as to prevent a break out of bacteria.
Those can be achieved in form of cartridges and immobilization steps. </li>
Those can be achieved in form of cartridges and immobilization steps. </li>
<li style="text-align:justify">No <b>WWTP personnel</b> should get in contact with GMOs without prior <b>safety instructions</b>. </li>
<li style="text-align:justify">No <b>WWTP personnel</b> should get in contact with GMOs without prior <b>safety instructions</b>. </li>
−
<li style="text-align:justify">The <b>public opinion on GMOs</b> reveals a <b>dread of unprecedented affects</b> but an <b>acceptance</b> when used for <b>medicinal applications</b>. </li>
+
<li style="text-align:justify">The <b>public opinion on GMOs</b> reveals <b>dread of unprecedented effects</b> but an <b>acceptance</b> when used for <b>medicinal applications</b>. </li>
−
<li style="text-align:justify">She suggested to <b>prevent misuse</b> (dual use issue) by adding a <b>safety form</b>. </li>
+
<li style="text-align:justify">She suggested <b>preventing misuse</b> (dual-use issue) by adding a <b>safety form</b>. </li>
</ul>
</ul>
<br>
<br>
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<li style="text-align:justify">To <b>comply with ethical standards</b>, we kept all standards in mind during the development of our project.
<li style="text-align:justify">To <b>comply with ethical standards</b>, we kept all standards in mind during the development of our project.
To justify possible tax increases because of our project,
To justify possible tax increases because of our project,
−
we had to prove private households as the primary source of wastewater pollution – which we were also told by <a href="https://2020.igem.org/Team:TU_Darmstadt/Integrated_Human_Practices#Prof. Dr. Jörg Oehlmann">Prof. Dr. Oehlmann</a> (click here).
+
we had to prove private households as the primary source of wastewater pollution – which we were also told by <a href="https://2020.igem.org/Team:TU_Darmstadt/Integrated_Human_Practices#Dr. Jörg Oehlmann" target="_blank">Prof. Dr. Oehlmann</a>.
−
To provide proper safety, we <b>strictly complied to <a href="https://2020.igem.org/Team:TU_Darmstadt/Safety">safety regulations for laboratories</a></b> and developed a <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch">kill switch system</a></b>.
+
To provide proper safety, we <b>strictly complied to <a href="https://2020.igem.org/Team:TU_Darmstadt/Safety" target="_blank">safety regulations for laboratories</a></b> and developed a <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch" target="_blank">kill switch system</a></b>.
−
Furthermore, we incorporated the concept of enzyme immobilization. To assure personnel safety, we created a <b><a href="https://static.igem.org/mediawiki/2020/3/37/T--TU_Darmstadt--How_to_B-tox.pdf">“How to use B-TOX”</a> instruction to educate WWTP employees</b> beforehand.
+
Furthermore, we incorporated the concept of <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Displaying_Enzymes" target="_blank">enzyme immobilization</a>. To assure personnel safety, we created a <b><a href="https://static.igem.org/mediawiki/2020/3/37/T--TU_Darmstadt--How_to_B-tox.pdf" target="_blank">“How to use B-TOX”</a> instruction to educate WWTP employees</b> beforehand.
−
To <b>minimalize the risk of misuse</b> we decided to add a <a href="https://static.igem.org/mediawiki/2020/3/37/T--TU_Darmstadt--How_to_B-tox.pdf"><b>safety form</b></a> for our project.
+
To <b>minimalize the risk of misuse</b> we decided to add a <a href="https://static.igem.org/mediawiki/2020/3/37/T--TU_Darmstadt--How_to_B-tox.pdf" target="_blank"><b>safety form</b></a> for our project.<br><br>
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For a more detailed review of our interview with Prof. Dr. Gaisser, <a href="XXXXXXXX">click here</a>. </li>
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For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li>
</ul>
</ul>
<br>
<br>
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<a class="anchor" id="Andreas_Jürgens"></a>
<div class="dropdownIntegrated" id="myButton14">Prof. Dr. Andreas Jürgens</div>
<div class="dropdownIntegrated" id="myButton14">Prof. Dr. Andreas Jürgens</div>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
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<ul>
+
<li style="text-align:justify">The <b>ethical evaluation</b> of our project is a major part of our research.
+
Andreas Jürgens is a professor at the Department of Biology at the <b>Technical University of Darmstadt</b> and is <b>part of the ethics
+
committee</b> at this university. The ethics committee evaluates if research projects are in <b>agreement with ethical standards</b>.
+
Therefore, he is most suited to help us find the strengths and weaknesses of our considerations.
+
Together with Prof. Dr. Jürgens, we talked about how to evaluate our project and further considerations. </li>
+
</ul>
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<br>
+
+
<h4 style="margin-left: 12px">Which information did we gather?</h4>
+
<ul>
+
<li style="text-align:justify">To evaluate the strengths and weaknesses of a project, one part is to make <b>risk evaluations</b>, considering not just biological aspects like horizontal gene transfer but also the practical implementation. Therefore, thinking about the <b>worst-case scenario</b> is important. Prof Jürgens told us, that the use of the endogenous <i>B. subtilis</i> laccase helps to stay genetically closer to the wild type.
+
+
Thereby, we <b>reduce the risk of unexpected effects</b> if cells do somehow escape into the environment. To evaluate the concrete risks of our project he suggested to <b>talk to experts</b> of <i>B. subtilis</i> or the staff of WWTPs. </li>
+
<li style="text-align:justify">A <b><a href="https://2020.igem.org/Team:TU_Darmstadt/Implementation#Costs for current procedures" target="_blank">cost-benefit analysis</a></b> could help us to understand how the costs for reducing the <b>potential risks</b> for humans and the environment relate to the potential benefits. </li>
+
<li style="text-align:justify">He confirmed our assumption, that we need to <b>train the people</b> getting in contact with our GMO. </li>
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</ul>
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<br>
+
+
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
+
<ul>
+
<li style="text-align:justify">We wrote a "<a href="https://static.igem.org/mediawiki/2020/3/37/T--TU_Darmstadt--How_to_B-tox.pdf" target="_blank">safety instruction form</a>” for the staff of WWTPs on <b>how to handle our biofilm</b>, regarding the safety of the user. </li>
+
<li style="text-align:justify">Our next step is to discuss with <i>B. subtilis</i> experts the risk of horizontal gene transfer and with WWTP experts the <b>physical containment possibilities</b>.
+
<li style="text-align:justify">We are continuing to <b>make our project safer</b> and reduce potential risks.<br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li>
+
</ul> <br>
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</div>
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<a class="anchor" id="Alfred_Nordmann"></a>
<div class="dropdownIntegrated" id="myButton15">Prof. Dr. Alfred Nordmann</div>
<div class="dropdownIntegrated" id="myButton15">Prof. Dr. Alfred Nordmann</div>
<h4 style="margin-left: 12px">Why did we talk to him?</h4>
+
<ul>
+
<li style="text-align:justify">
+
+
Besides our whole <a href="https://2020.igem.org/Team:TU_Darmstadt/Awards#Best Integrated Human Practices" target="_blank">Human Practices</a> work, we wanted to know how to <b>create an ethical and
+
responsible research project</b> more specifically. Therefore, we contacted Prof. Alfred Nordmann who is a philosopher at
+
the TU Darmstadt and expert for <b>technoscience and science philosophy</b>. </li></ul>
+
+
<h4 style="margin-left: 12px">Which information did we gather? </h4>
+
<ul>
+
<li style="text-align:justify">
+
+
Nowadays, the idea of <b>Responsible Research and Innovation (RRI)</b> plays a major role. It describes that
+
researchers should be in contact with possible stakeholders while researching and designing their project.
+
The <b>input</b> they get from various groups <b>should be included</b> in the whole process. </li>
+
+
<li style="text-align:justify">Prof. Dr. Nordmann explained to us how to <b>evaluate a project ethically</b>, which should not be a simple checklist.
+
He also told us why it is important to think about this field <b>while</b> designing a scientific project and
+
not afterwards. </li>
+
+
<li style="text-align:justify">Consequently, <a href="https://2020.igem.org/Team:TU_Darmstadt/Education" target="_blank">Science Communication</a> is an important issue too. Hereby, it is especially important to
+
<b>differ between educating or coming in a dialogue with the public</b>. The latter is more important since
+
it fulfils the idea of RRI much stronger. </li>
+
+
<li style="text-align:justify">The <b>precautionary principle</b> is in a certain way a direct consequence of RRI as well. It means that
+
during the design process a producer or a researcher should think of <b>possible problems</b> and do everything
+
possible to <b>avoid</b> them. </li>
+
+
<li style="text-align:justify">Since micropollutants are present in the environment, we as humans are <b>liable for their removal</b>.
+
The question of who is to be specifically responsible for the removal remains open. While discussing
+
this we considered consumers and producers into account. </li></ul>
+
+
<h4 style="margin-left: 12px">How did we adjust our project?</h4>
+
<ul>
+
+
<li style="text-align:justify"> We had to <b>process and reflect</b> on all his considerations and thoughts. On one hand, we did this by
+
<b>writing a discussion about our project</b> and how we tried to do <a href="https://2020.igem.org/Team:TU_Darmstadt/HP/Ethics" target="_blank">responsible research</a>. On the other hand, we have taken much out of this discussion and thought this
+
topic was so important that we <b>recorded a <a href="https://2020.igem.org/Team:TU_Darmstadt/Education#Responsible_Research" target="_blank">podcast episode</b></a> about it.</li>
+
+
<li style="text-align:justify"> We felt confirmed in our focus on <a href="https://2020.igem.org/Team:TU_Darmstadt/Awards#Best Education" target="_blank">Science Communication</a> but learned something for further research
+
projects. With our survey and the Livestream with iGEM team Kaiserslautern, we came in <b>direct contact
+
with people</b> and <b>listened to their opinions</b>. In future projects, we would focus more on establishing
+
such forms of interactive Science Communication.<br><br>
+
+
For a more detailed review of our interview <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>. </li></ul><br>
</div>
</div>
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<br>
+
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For more detailed reviews of our interviews <a href="https://static.igem.org/mediawiki/2020/9/97/T--TU_Darmstadt--HP_interviews_in_detail.pdf" target="_blank">click here</a>.
target="_blank">[1] German Environment Agency: Chemikalienwirkung, https://www.umweltbundesamt.de/daten/chemikalien/chemikalienwirkungen#prufen-der-umweltwirkung-von-chemikalien, accessed on September 23rd 2020</a>
In the last few centuries, purification of wastewater has undeniably grown to be a
vital necessity in terms of water hygiene, water recycling and ultimately water
scarcity. Wastewater purification is a highly complex topic that we tried to
grasp over the course of this year. As a result, we learned to understand the
imperative of responsible research - to think through every step
of our project and get in contact with stakeholders in wastewater treatment
plants (WWTP), microbiologists, ecotoxicologists and ethics experts
amongst others. "B-TOX" has only come so far because it profited on
the abundant spectrum of experts. Their input had an enormous impact on
the decision-making of our project. Many experts confirmed that our project
should be pursued due to the danger pharmaceuticals like diclofenac pose to the
environment. We obtained help
in maturing our project, adapting and designing our application to the
special circumstances in WWTPs as well as help in creating a responsible
research project. Click on the picture above or scroll down to learn more!
Environment
As a first step, we needed to understand the general problem as good as possible. We contacted the German federal environment agency (UBA) as well as an ecotoxicologist to learn more about how micropollutants end up in the environment and what impact they have.
Toggle All
Dr. Patrick Schröder
Why did we talk to him?
Patrick Schröder is a scientific administrator at the German
Environment Agency.
He is specialized in biodegradation of pharmaceuticals and the development and spread of antimicrobial
resistance in the environment.
Which information did we gather?
He brought common mistakes in the disposal of pharmaceuticals to our attention. In many regions in Germany,
it is sufficient for them to be disposed of via household waste, but in others, they must be returned to
designated collection facilities or pharmacies. In Germany, consumers can find out the correct disposal method on arzneimittelentsorgung.de
He also told us about pharmaceuticals that cause an immense burden on the
environment due to their high consumption such as ibuprofen and hormones like estrogen. These pose risk to
aquatic flora and fauna.
Furthermore, he pointed out that diclofenac, a substance that we focus our attention on,
has never undergone an environmental risk assessment as of today since it was authorized before 2005, like many other pharmaceuticals.
How did we adjust our project?
To bring the information about the proper disposal of pharmaceuticals to the broader public,
we translated the flyer from the German Environment Agency into English, to increase the awareness of the general public internationally.
We also decided to take a closer look at the degradation of estrogen and ibuprofen by
laccases. Since laccases also are able to transform both substances, we try to make our
contribution here.
Our goal is to educate the citizens. If illness or symptoms exist, it is necessary
to use pharmaceuticals in the process of recovery, but excessive consumption leads to environmental
pollution and species extinction[1].
For a more detailed review of our interview click here.
Prof. Dr. Jörg Oehlmann
Why did we talk to him?
We wanted to know more about micropollutants affecting the aquatic world in our waters. Therefore, we contacted Prof. Dr. Jörg Oehlmann. He has been Professor for aquatic ecotoxicology at the Goethe University in Frankfurt am Main since 2001.
Which information did we gather?
Prof. Oehlmann informed us about the evaluation of substance toxicity and why harmful effects are difficult to prove.
Once again, he told us how harmful diclofenac (PNEC 50 ng/L) is and that in a lot of waters in Germany the recommended threshold values are exceeded.
Concerning our implementation, he drew attention to our plastic-based biofilm carriers. Through them, we would introduce plasticizers as well as microplastics into the water. In addition, he made us aware of the spatial limitation municipal wastewater treatment plants (WWTP) have, which could make the inclusion of an additional clarifier for our biofilm impossible.
How did we adjust our project?
We did a lot of research on the aforementioned substances and found that the laccases we use are already able to degrade all of them. As a future outlook when we could go into the laboratory, we plan to test laccase activity in assays with those compounds.
Furthermore, we thought about new strategies for the implementation of our project besides that of an additional clarifier. We want to avoid using plastic carriers and developed a system which fits the conditions in municipal WWTPs as well.
For a more detailed review of our interview click here.
Synthetic Biology
Since we were not able to get into the lab, we wanted to elaborate our project in detail theoretically. Therefore, we talked to microbiologists and other experts about our ideas to get as much information as possible and learn from their experiences.
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Prof. Dr. Jörg Stülke
Why did we talk to him?
Jörg Stülke is the head of the Department of General Microbiology
at the Institute of Microbiology and Genetics at the University of Göttingen. He is an
expert for B. subtilis and designed a strain that has got a knockout of the genes sinR and tasA
(GP1622)[2]. This strain would be
useful for testing if we could bring our enzymes as fusion proteins with TasA into the
biofilm matrix (see here).
What information did we gather?
Besides providing us with the needed strain GP1622, he agreed with
our assumption, that a knockout of sinR would not have any negative impacts on our biofilm.
How did we adjust our project?
Getting the GP1622 B. subtilis strain enabled us to design our
experiments and would have shortened the needed time in the lab.
Dr. Sabine Sané
Why did we talk to her?
Dr. Sabine Sané did her subsequent PhD studies at the Department of Microsystems Engineering at the University Freiburg and investigated biotechnological approaches to regenerative energy systems. Among other things, her research also concentrated on the degradation of micropollutants in wastewater. Therefore, her work and experience with laccases made her a great asset for our project. Dr. Sané was interviewed by our friends from iGEM Kaiserslautern.
Dr. Sané mainly worked with the laccase of the fungus Trametes versicolor.
What information did we gather?
The purification of laccases is very laborious and expensive. As a result we would benefit from avoiding it. An ABTS assay can be used to determine the incubation period by measuring the degradation rate
The degradation of estrogen via laccases is theoretically possible and was proved successful with the laccase of Trametes versicolor.
The pH optimum of the laccases needs to be considered and the pH value of the wastewater must eventually be adjusted accordingly.
How did we adjust our project?
We were able to gather information in the conversation with Dr. Sané, thanks to the framework of our partnership with iGEM Kaiserslautern and iGEM Stuttgart. As a result, all her input has helped us to acquire more knowledge about the functionality of laccases, like the degradation of estrogen, which is also a problem in wastewater (see here). For our experimental approach, we can resort to her contribution.
PhD Yunrong Chai
Why did we talk to him?
PhD Yunrong Chai is an assistant professor at the College of Science at the Northeastern University in Boston and an expert for microbial genomics and biofilm formation.
We talked to him about our ideas to engineer and improve our biofilm.
Which information did we gather?
Concerning our plan to knockout the sinR gene of our B. subtilis to simplify the induction of the biofilm formation,
PhD Chai explained that this knockout will make our biofilm more robust.
The effects on other properties of our B. subtilis and our biofilm should be minor.
Endospores are not able to produce our degradation enzymes, which is why preventing sporulation of our B. subtilis is a good idea.
As the sigma factor F (σF) regulates genes associated with sporulation, he suggested a sigF knockout to avoid sporulation.
PhD Chai predicted no impact on gene expression outside of sporulation.
The combination of a sigF and sinR knockout would lead to a B. subtilis that can not sporulate and forms a more robust biofilm.
A fusion protein of the matrix protein TasA with our enzymes would be a perfect way to display the degradation enzymes in the biofilm matrix.
Because TasA is very abundant, many enzymes would be located in the matrix.
Furthermore, he already worked with fusion proteins of TasA with fluorescence proteins, which were originally made in Roberto Kolter’s lab (Harvard Medical School, Boston).
A mixed biofilm of different microorganisms could increase the robustness of our biofilm but would also complicate our assays and would be an advanced step in your project.
How did we adjust our project?
We continued planning our fusion proteins with TasA and the knockout of sinR. Additionally, we integrated the knockout of sigF into our project to avoid sporulation of our B. subtilis. (See Biofilm Engineering for more information.)
Dr. Dietmar Schlosser
Why did we talk to him?
Dr. Dietmar Schlosser is group leader of the Environmental Mycology Research Group in the Department of Environmental Microbiology, Helmholtz Centre for Environmental Research – UFZ in Leipzig.
Although he is more of an expert for fungal laccases, we still considered his experience with laccases in general as valuable.
All given answers and input from below were gathered from the interview protocol provided by iGEM Kaiserslautern since they spoke directly with Dr. Schlosser and offered to ask our question in collaboration
Which information did we gather?
Dr. Schlosser has confirmed one (among other) native functions of laccases: their ability to detoxify. Polymeric products frequently arising from laccase-catalyzed oxidation of toxic (or otherwise biologically active) compounds are often biologically inactive.
Using discontinuous fungal cultures, ABTS assays can be employed to determine the time point of maximal laccase activity. Typically, this is observed over a range of a few days up to several weeks. As the optimal assay concentration of ABTS, he recommended 1-2 mM.
To monitor the oxidation of parent compounds, Dr. Schlosser uses UHPLC coupled with either DAD or MS/MS detection.
He has also investigated the toxicity of products by means of bacterial inhibition tests, which provide EC50 values.
How did we adjust our project?
The information we gained from the conversation with Dr. Schlosser within the framework of our
partnership with iGEM Kaiserslautern and iGEM Stuttgart has helped us to develop a further understanding of working with laccases.
In our experimental planning, we can resort to the bundled knowledge we have collected,
as Dr. Schlosser’s approach on the tracing of product degradation is similar to our approach with HPLC.
In correspondence to his toxicity assessments, we are confirmed in our experimental approach.
Implementation
For the implementation of our project, we did not only get in touch with several WWTPs but also visited one ourselves. Furthermore, we talked to a professor who already works on using biofilms in WWTPs and obtained useful information on how our biofilm could be implemented. We submitted questions to the German Environment Agency for Consumer Protection and Food Safety about the legal situation of GMOs.
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Prof. Dr. Susanne Lackner
Why did we talk to her?
Professor Dr. Lackner is the head of the Chair of Wastewater Engineering at the TU
Darmstadt since 2016. She is known for her work on microbial communities for wastewater
treatment in Germany, but also abroad, which is why an interview with her was of great
interest for us. More so compelling was the fact that she has significant experience with the
reduction of harmful pharmaceutical residues.
What information did we gather?
Prof. Lackner told us about possible complications regarding GMOs
in WWTPs and the difficulties surrounding this topic. She could
confirm the danger pharmaceuticals pose in wastewater, among them diclofenac, as she has
been working on its removal herself.
Hence, she was able to assure us that oxidation of diclofenac
was more than possible – as this has already been done. For this, it was even more helpful
that she sent us continuative literature regarding diclofenac, as one of her PhD. students
has worked on removing this substance.
When asked about other harmful substances, Prof. Lackner
mentioned ibuprofen and carbamazepine as well as others.
Due to her vast experience, she also gave us immense input
regarding a carrier material for our biofilm and told us about the most efficient
environmental conditions.
How did we adjust our project?
She did not only confirm the alarming toxicity of diclofenac and
that there is a need for a project idea like ours, but also pointed us in the direction of
searching for other substances like carbamazepine.
Her willingness to be at our disposal regarding literature or
information about diclofenac and wastewater treatment made her a great asset for our
project. Thanks to her, and her research group, we were able to get crucial information
on how and to which extent diclofenac can be oxidized by laccases.
Since we were undecided on which carrier material we should apply
for our biofilm, her recommendation of the ones she uses and the offer to provide us with
them has meant a great deal for the thriving of our project.
For a more detailed review of our interview click here.
Dipl. Ing. Udo Bäuerle
Why did we talk to him?
In the early phase of our project, we already knew that WWTPs would be the main users of our project.
Therefore, we had to find an expert who could introduce us into the purification stages and help us find the best way to implement our biofilm.
Udo Bäuerle studied construction engineering and focused on water management as well as wastewater treatment. With his company B&P Beratende Ingenieure, he constructed a lot of WWTPs.
Which information did we gather?
He told us about the reoccurring problems associated with commonly used procedures like ozonolysis and the use of active carbon.
Udo Bäuerle assured us that a project like ours would be really helpful and advised us to implement our system in an additional
clarifier as a fourth purification step. Our engineered B. subtilis probably will not survive in the activated sludge
clarifier which is the second purification step.
Udo Bäuerle was the first person to mention rotating disc filters on which our biofilm could grow on and could be implemented into the WWTP.
How did we adjust our project?
On this basis, we were able to discuss our project with plant managers of local WWTPs.
We did research about the diving bodies and after discussing this idea with other experts we finally came to the biofilm carriers we want to use.
For a more detailed review of our interview click here.
Florian Heyn
Why did we talk to him?
Florian Heyn occupies a management position for the WWTP in Alzenau and is mainly responsible for organizational decisions.
Which information did we gather?
Heyn explained to us that micropollutants such as drug residues are a well-known problem and that "filtering out these substances is only possible to a limited extent or not at all, or only at great expense", which further confirms the relevance of our project.
He also considers the use of biofilm carriers as a platform for the formation of our biofilm to be possible. For the first testing, Heyn told us about special test basins called IBCs (Intermediate Bulk Containers), which have a volume of about 1 m3.
It is crucial to secure that GMOs do not get into the environment as they can bring great harm to natural species. Therefore, the safety option Heyn suggested is treatment with UV light or an agitator that could kill the microorganisms mechanically.
How did we adjust our project?
His input inspired us to think more in detail about safety aspects and because this is such an important topic for the final implementation of our project, we started to develop a biological security system using a newly designed kill switch.
Heyn stressed that it depends particularly on costs, use, safety and economy, whether our project is useful enough for the final integration. As a result, we spent more time thinking about how our project can be perfectly adapted to the specifications and guidelines of WWTPs.
For a more detailed review of our interview click here.
Dr. Ulrich Ehlers
Why did we talk to him?
To implement our biofilm into WWTPs, we have to deal with legal requirements in Germany.
Therefore, the iGEM team Kaiserslautern had the idea to contact Dr. Ulrich Ehlers from the Federal Office for Consumer Protection and Food Safety (BVL) and since we are working closely together, we were able to ask him a few questions. He has been the head of the "release and placing on the market" section in the BVL’s "Genetic Engineering" Department.
Which information did we gather?
A distinction is made between content use and works outside a closed system.
The latter is divided into “release” and “placing on the market”. Both of them are no applicable options for our project. (See more -->click here)
For our project, he recommended content use with measures to ensure the biofilm is not leaving the WWTP.
WWTPs where we would implement our project would then have to be classified as a “genetic engineering plant” by the local state authorities.
How did we adjust our project?
Now we do know whom we have to contact if we plan to implement our system into the first WWTP. We have also put our focus more on creating a system that enables working in content use and getting a WWTP classified as genetic engineering plant. Besides various efforts, we designed a kill switch.
For a more detailed review of our interview click here.
Thomas Seeger
Why did we talk to him?
Thomas Seeger is part of the management team of the Weiterstadt WWTP. He is responsible for employee safety and organizational activities.
Which information did we gather?
Seeger told us that there are already technical attempts to treat difficult-to-degrade substances in the final purification process, but this so-called “fourth purification stage” is very expensive to be installed. In his opinion, this is an important reason for the necessity of our project.
He spoke to us about the competition between the native microorganisms of the biological purification stage and our genetically modified organism and recommended that we should consider a further, separate purification stage for the integration of the module.
When we asked about employee protection, Seeger mentioned that WWTP workers are already receiving regular safety instructions and that basic biological knowledge is also passed on to the workers in the corresponding training, before they start to work in the WWTP.
Employee safety is a key aspect that needs to be taken seriously. This led us to create a safety form about how to handle our biofilm which can be used by future users, especially the responsible persons as well as the workers of the WWTPs.
For a more detailed review of our interview click here.
Visit of Wastewater Treatment Plants
Visit of a WWTP in Darmstadt, Germany
Since our project is to be integrated into WWTPs in the future, we wanted
to have a first-hand look at such a WWTP. For that, we visited the WWTP
from ENTEGA in Darmstadt. This visit allowed us to see by ourselves how wastewater
treatment can work and which steps are necessary to achieve a clean outcome. We learned how
different WWTPs can be and how differently they have to deal with new
guidelines concerning the quality of the treated wastewater. The WWTP in
Darmstadt is built of a primary treatment clarifier, followed by biological wastewater
treatment and a final clarifier.
For the implementation of our biofilm, a new clarifier for an additional purification stage
would be necessary for the mentioned WWTP. Space for another tank in this
plant is available but we have to consider that especially WWTPs in
bigger cities wouldn’t have enough space for this. Considering this issue, we thought about
different options to implement our project.
Visit of the WWTP in Darmstadt
Visit of a WWTP in Archbold, Ohio
Wastewater treatment is a global problem. In our project, we do not only aim for implementation
in WWTPs in Germany but also in other countries. Therefore, it
is important to look into the structure of WWTPs around the globe. Our partnership with the
iGEM team from Kaiserslautern enabled us to
get into contact with Mike Short and Dan Avers from the WWTP in Archbold, Ohio. Dan Avers is a water
distribution chief and Mike Short is a wastewater superintendent.
We found out that there are five different classes of plants in the United States, ranging
from one to five with five being the highest. The higher the class, the bigger the plant and
the amount of water purified daily. In addition, more and more complex purification stages are
installed with increasing class[3]. The WWTP in Archbold belongs to class three with a 2.5 MGD
(million gallons per day) design flow. It contains bacterial sewage sludge as a secondary treatment
in seven aeration tanks with two settling tanks installed behind. The effluents from those tanks
are treated with chlorine to kill pathogenic organisms. Sodium chloride is used to remove any
remaining chlorine before the effluent flows into the Brush Creek[4]. Mr. Short told us that
they do not measure the concentration of micropollutants in the incoming wastewater as it is
done in the WWTP we visited in Darmstadt, Germany. Instead, there is mandatory annual testing
by the state. He told us that as far as he knows no federal laws or regulations prohibiting
the use of GMOs in WWTPs. But the decision whether GMOs are allowed is still up to the Environmental
Protection Agency (EPA).
Another key factor is funding. As WWTPs are always being redesigned and new components are added
there is a need for financial security. Therefore, costs for the installation and operation of our
project have been estimated and it has been shown that the use of
"B-TOX" is cheaper than currently available methods for removing micropollutants from wastewater.
Besides, the fact that the WWTPs are constantly redesigned benefits us. The implementation if
"B-TOX" can be combined with normal refurbishments or other new installations. Making it easily
implementable and also easy to remove from the system.
By this WWTP tour, we learned more about the differences that exist between WWTPs around the world.
Understanding the different types and classes of WWTPs helped us to think about an implementation
strategy that fits for many different plants and reminded us that it would be good to think about
alternative approaches.
Prof. Dr. Ralf Möller
Why did we talk to him?
Prof. Dr. Ralf Möller is the head of the Aerospace Microbiology group at the German Aerospace Center (DLR) in Cologne.
He is also a professor of Space Microbiology at the Bonn-Rhein-Sieg University of Applied Sciences.
Prof. Dr. Möller has almost 20 years of experience with biofilms and especially with B. subtilis.
Which information did we gather?
Overexpressing a TasA enzyme fusion protein in B. subtilis could not only be used for wastewater treatment on earth but also for biomining so-called rare earth elements, especially for the later application in the field of asteroid mining.
To be able to purify wastewater with the "B-TOX" system e.g. on a space station, the stability of our biofilm would have to be increased. This is necessary because biofilms behave differently in space than they do on earth due to the equal distribution of liquids in space.
Our kill switch is a good method to ensure biocontainment.
How did we adjust our project?
Prof. Dr. Möller inspired us to broaden our horizon and to look into the implementation of our biofilm in space. (Biofilm in space as link)
Furthermore, he encouraged us in the development of our kill switch, as he thinks it is of great interest to be able to make the growth rate of the biofilm dependent on certain situations or desired environments.
For a more detailed review of our interview click here.
Ethics
It’s really important for us to shape our research responsible and think of the ethical aspects of our project. We talked about this with professors for philosophy and a member of the ethic commission of our university.
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Prof. Dr. Sibylle Gaisser
Why did we talk to her?
Prof. Dr. Sibylle Gaisser is a professor for industrial biotechnology and her field of teaching includes bioethics among other
subjects at the University of Applied Sciences Ansbach. Whereas her field of research consists of Synthetic Biology and antibiotics-biosynthesis,
her research about socio-economic analyses and technology assessment in life sciences was of great interest to us.
Which information did we gather?
Prof. Dr. Gaisser advised us to guarantee the compliance with ethical standards,
such as that there would come no harm to the public or non-beneficiaries,
that we would provide accessibility to all, preserve the environment and protect all wildlife with our project.
In the case of an implementation of our project idea into WWTPs,
we would have to prove that private households pose to be the primary source of wastewater pollution to
justify possible tax increases. This way, we would employ the polluter-pays principle.
She advised us to always ensure a closed system when it comes to the application of GMOs. In addition,
we should provide a physical containment as well as to prevent a break out of bacteria.
Those can be achieved in form of cartridges and immobilization steps.
No WWTP personnel should get in contact with GMOs without prior safety instructions.
The public opinion on GMOs reveals dread of unprecedented effects but an acceptance when used for medicinal applications.
She suggested preventing misuse (dual-use issue) by adding a safety form.
How did we adjust our project?
To comply with ethical standards, we kept all standards in mind during the development of our project.
To justify possible tax increases because of our project,
we had to prove private households as the primary source of wastewater pollution – which we were also told by Prof. Dr. Oehlmann.
To provide proper safety, we strictly complied to safety regulations for laboratories and developed a kill switch system.
Furthermore, we incorporated the concept of enzyme immobilization. To assure personnel safety, we created a “How to use B-TOX” instruction to educate WWTP employees beforehand.
To minimalize the risk of misuse we decided to add a safety form for our project.
For a more detailed review of our interview click here.
Prof. Dr. Andreas Jürgens
Why did we talk to him?
The ethical evaluation of our project is a major part of our research.
Andreas Jürgens is a professor at the Department of Biology at the Technical University of Darmstadt and is part of the ethics
committee at this university. The ethics committee evaluates if research projects are in agreement with ethical standards.
Therefore, he is most suited to help us find the strengths and weaknesses of our considerations.
Together with Prof. Dr. Jürgens, we talked about how to evaluate our project and further considerations.
Which information did we gather?
To evaluate the strengths and weaknesses of a project, one part is to make risk evaluations, considering not just biological aspects like horizontal gene transfer but also the practical implementation. Therefore, thinking about the worst-case scenario is important. Prof Jürgens told us, that the use of the endogenous B. subtilis laccase helps to stay genetically closer to the wild type.
Thereby, we reduce the risk of unexpected effects if cells do somehow escape into the environment. To evaluate the concrete risks of our project he suggested to talk to experts of B. subtilis or the staff of WWTPs.
A cost-benefit analysis could help us to understand how the costs for reducing the potential risks for humans and the environment relate to the potential benefits.
He confirmed our assumption, that we need to train the people getting in contact with our GMO.
How did we adjust our project?
We wrote a "safety instruction form” for the staff of WWTPs on how to handle our biofilm, regarding the safety of the user.
Our next step is to discuss with B. subtilis experts the risk of horizontal gene transfer and with WWTP experts the physical containment possibilities.
We are continuing to make our project safer and reduce potential risks.
For a more detailed review of our interview click here.
Prof. Dr. Alfred Nordmann
Why did we talk to him?
Besides our whole Human Practices work, we wanted to know how to create an ethical and
responsible research project more specifically. Therefore, we contacted Prof. Alfred Nordmann who is a philosopher at
the TU Darmstadt and expert for technoscience and science philosophy.
Which information did we gather?
Nowadays, the idea of Responsible Research and Innovation (RRI) plays a major role. It describes that
researchers should be in contact with possible stakeholders while researching and designing their project.
The input they get from various groups should be included in the whole process.
Prof. Dr. Nordmann explained to us how to evaluate a project ethically, which should not be a simple checklist.
He also told us why it is important to think about this field while designing a scientific project and
not afterwards.
Consequently, Science Communication is an important issue too. Hereby, it is especially important to
differ between educating or coming in a dialogue with the public. The latter is more important since
it fulfils the idea of RRI much stronger.
The precautionary principle is in a certain way a direct consequence of RRI as well. It means that
during the design process a producer or a researcher should think of possible problems and do everything
possible to avoid them.
Since micropollutants are present in the environment, we as humans are liable for their removal.
The question of who is to be specifically responsible for the removal remains open. While discussing
this we considered consumers and producers into account.
How did we adjust our project?
We had to process and reflect on all his considerations and thoughts. On one hand, we did this by
writing a discussion about our project and how we tried to do responsible research. On the other hand, we have taken much out of this discussion and thought this
topic was so important that we recorded a podcast episode about it.
We felt confirmed in our focus on Science Communication but learned something for further research
projects. With our survey and the Livestream with iGEM team Kaiserslautern, we came in direct contact
with people and listened to their opinions. In future projects, we would focus more on establishing
such forms of interactive Science Communication.
For a more detailed review of our interview click here.
For more detailed reviews of our interviews click here.
