Difference between revisions of "Team:BITSPilani-Goa India/Description"

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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Description | SugarGain | iGEM BITS Goa</title><script src="https://2020.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><link href="https://2020.igem.org/Template:BITSPilani-Goa_India/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><nav class="navbar navbar-expand-lg d-flex justify-content-between bg-none nav-transparent fixed-top"><a class="navbar-brand d-lg-inline-block" href="https://2020.igem.org/Team:BITSPilani-Goa_India">iGEM <span>BITS Goa</span></a><div id="fullscreenMenuWrapper"><input id="menuToggle" type="checkbox"/><label for="menuToggle"><div id="menuSwitch"></div></label><div id="fullscreenMenu"><label class="mr-3" for="menuToggle"></label><div class="container w-100 h-100"><div class="h-100" id="menuContent"><div class="row w-100 mb-4"><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Overview</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Results">Results</a></li></ul></div><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Project</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Contribution</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Improve">Improve</a></li></ul></div><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Parts</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Overview">Overview</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Basic_Parts">Basic Parts</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Composite_Parts">Composite Parts</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts_Collection">Parts Collection</a></li></ul></div><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Human Practices</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human Practices</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Outreach">Outreach</a></li></ul></div><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Team</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team_Members">Team Members</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></div><div class="col-md-4 col-sm-12 py-3"><a class="nav-heading">Awards</a><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Plant">Plant</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></div></div></div></div></div></div></nav><header class="d-flex justify-content-center"><div class="container d-flex align-items-end"><div id="heading"><h1>Description</h1></div></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><ul></ul></div></div><div class="content col-lg-9"><article><h1>Problem Statement</h1><p>The <dfn>current ~ ongoing</dfn> industry practices for chlorophyll removal from green seed canola oil involve the use of acid-activated (AACs). However, AACs are associated with a variety of problems, including product loss, lackusability, and environmental concerns.</p><h2>Level 2 Heading1</h2><p>Naman: The molecular causes them to bind to chlorophyll and retain large volumes of oil,</p><p>Suhas: The molecular xyz of AACs causes them to bind to chlorophyll and retain large volumes of oil,</p><p>resulting in a 20% loss of oil during processing.</p><p>Srxlmp says: Ur face sucks The irreversible binding between the AACs and chlorophyll prevents reuse of the AACs, leading</p><p>SShastri says: The <strong>BOOM GOES THE DYNAMITE</strong> the AACs and chlorophyll prevents reuse of the AACs, leading</p><p>to increased costs for the manufacturer. This also increases the amount of <a href="#citation1">Rosano et al., 2019</a> waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by.</p><h3>Level 3 Heading</h3><p>causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of oil during processing. The irreversible binding between the AACs and chlorophyll prevents reuse of the AACs, leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the #ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs. whatever</p><h1>Project Design</h1><p>The current industry practices for chlorophyll removal from green seed canola oil involve the use of acid-activated clays (AACs). However, AACs are associated with a variety of problems, including product loss, lack of reusability, and environmental concerns.</p><div class="image"><img alt="hello" src="https://static.igem.org/mediawiki/2020/4/47/T--BITSPilani-Goa_India--img--Description--calgary.jpg"/><p>Figure 1: hello</p></div><div class="image"><img alt="trump" src="https://static.igem.org/mediawiki/2020/9/9f/T--BITSPilani-Goa_India--img--Description--giphy.gif" style="width:40%"/><p>Figure 2: trump</p></div><h1>Genetic Design of Biosensor</h1><p>This is the genetic circuit brooooo look how cool!</p><div class="image"><img alt="Genetic Circuit of Biosensor" src="https://static.igem.org/mediawiki/2020/e/ef/T--BITSPilani-Goa_India--img--Biosensor.PNG"/><p>Figure 3: Genetic Circuit of Biosensor</p></div><h2>Level 2 Heading2</h2><p>The molecular structure of AACs causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of oil during processing. The irreversible binding between the AACs and chlorophyll prevents reuse of the AACs, leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut dolore magna aliqua.</p><blockquote><p>Creativity is just connecting things. When you ask creative people how they did something, they feel a little guilty because they didn't really do it, they just saw something. It seemed obvious to them after a while. That's because they were able to connect experiences they've had and synthesize new things.</p><p><strong>Steve Jobs</strong></p></blockquote><h3>Level 3 Heading</h3><p>The molecular structure of AACs causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of <a href="#citation2">Allen &amp; Sheridan, 2015</a> oil during processing. The irreversible binding between the AACs and chlorophyll prevents reuse of the AACs, leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs.</p><h1>Dummy Section</h1><p>The current industry practices for chlorophyll removal from green seed canola oil involve the use of acid-activated clays (AACs). However, AACs are associated with a variety of problems, including product loss, lack of reusability, and environmental concerns.</p><h2>Level 2 Heading</h2><p>The molecular structure of AACs causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of oil during processing. The irreversible binding between the AACs and chlorophyll prevents reuse of the AACs, leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs.</p><p>$$<br/>J(\theta) =\frac{1}{2m} [\sum^m_{i=1}(h_\theta(x^{(i)}) - y^{(i)})2 + \lambda\sum^n_{j=1}\theta^2_j $$</p><p><mark>here be dragons</mark></p><table><caption id="table1captiongoeshere">Table 1: Caption goes here.</caption><thead><tr><th>This is</th><th>the table</th><th>header row</th></tr></thead><tbody><tr><td>1</td><td>2</td><td>3</td></tr><tr><td>4</td><td>5</td><td>6</td></tr><tr><td>Content</td><td><strong>Cell</strong></td><td>Cell</td></tr><tr><td>New section</td><td>More</td><td><a href="https://google.com">Data</a></td></tr><tr><td>And more</td><td colspan="2">With an escaped '|'</td></tr></tbody></table><table><caption id="table1captiongoeshere">Table 1: Caption goes here.</caption><thead><tr><th></th><th colspan="2" style="text-align:center">Grouping</th></tr><tr><th>First Header</th><th style="text-align:center">Second Header</th><th style="text-align:right">Third Header</th></tr></thead><tbody><tr><td>Content</td><td colspan="2" style="text-align:center"><em>Long Cell</em></td></tr><tr><td>Content</td><td style="text-align:center"><strong>Cell</strong></td><td style="text-align:right">Cell</td></tr><tr><td>New section</td><td style="text-align:center">More</td><td style="text-align:right"><a href="https://google.com">Data</a></td></tr><tr><td>And more</td><td colspan="2" style="text-align:center">With an escaped '|'</td></tr></tbody></table><p>The molecular structure of AACs causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of oil during processing. The irreversible binding between the AACs and <dfn>chlorophyll ~ green pigment</dfn> prevents reuse of the AACs, leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient <a href="https://google.com">here is a link</a> availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs.</p><p>The current industry <em><strong>practices</strong></em> for chlorophyll removal from green seed canola oil involve the use of acid-activated clays (AACs). However, AACs are associated with a variety of problems, including product loss, lack of reusability, and environmental concerns.</p><p>The molecular structure of AACs causes them to bind to chlorophyll and retain large volumes of oil, resulting in a 20% loss of <a href="#citation2">hello again</a> oil during processing. The irreversible binding between the AACs and chlorophyll prevents reuse of the , leading to increased costs for the manufacturer. This also increases the amount of waste produced by the system. The waste is mixed into animal feed and released into the ecosystem, where it has the potential to alter soil pH and nutrient availability for future crops. Our team sought to find an alternative method of oil-processing that addresses all three issues presented by AACs.</p></article><div class="d-flex justify-content-between my-5"><a class="button prev flex justify-content-end medium" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Previous"><span aria-hidden="aria-hidden" class="circle"><span class="icon arrow"></span></span><span class="button-text">Previous</span></a><a class="button next short" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Sample"><span aria-hidden="aria-hidden" class="circle"><span class="icon arrow"></span></span><span class="button-text">Sample</span></a></div></div></div></div></main><footer><div id="footerNav"><div class="container"><div class="row justify-content-between"><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Overview</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Results">Results</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Project</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Contribution</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Improve">Improve</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Parts</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Overview">Overview</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Basic_Parts">Basic Parts</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Composite_Parts">Composite Parts</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts_Collection">Parts Collection</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Human Practices</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human Practices</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Outreach">Outreach</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Team</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team_Members">Team Members</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-2 py-2"><a class="footer-heading">Awards</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Plant">Plant</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></div></div></div></div><div id="footerBrand"><div class="container"><div class="row"><div id="footerLogo"></div></div><div class="row justify-content-center" id="footerIcons"><a class="gmail" href="mailto:igembitsgoa@gmail.com" target="_blank"></a><a class="insta" href="https://instagram.com/igem_bits" target="_blank"></a><a class="twitter" href="https://twitter.com/igembitsgoa" target="_blank"></a></div></div></div></footer><script src="https://2020.igem.org/Template:BITSPilani-Goa_India/content-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Description | SugarGain | iGEM BITS Goa</title><link href="https://2020.igem.org/Template:BITSPilani-Goa_India/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><nav id="main-nav"><div class="navbar navbar-expand-lg d-flex justify-content-between bg-none nav-transparent fixed-top"><a class="navbar-brand d-lg-inline-block" href="https://2020.igem.org/Team:BITSPilani-Goa_India">Sugar<span>Gain</span></a><div class="controls h-100 d-flex align-items-center"><div class="align-items-center" id="themeSwitchWrapper"><i class="icon-light"></i><div id="themeSwitch"><label class="switch" for="themeSwitchInput"><input id="themeSwitchInput" type="checkbox"/><span class="slider round"></span></label></div><i class="icon-dark"></i></div><button class="btn" id="menuSwitch"><div class="menu-icon"></div></button></div></div><div id="fullscreenMenu"><div 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href="https://2020.igem.org/Team:BITSPilani-Goa_India/Policy">Policy</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Sustainable_Development">Sustainable Development</a></li></ul></div></div></div></div></div></div></nav><header class="d-flex justify-content-center" style="background-image:linear-gradient(rgba(0, 0, 0, 0.4),rgba(0, 0, 0, 0),rgba(0, 0, 0, 0.4)), url(../assets/img/Description--josh-withers.jpg);"><div class="container d-flex align-items-end justify-content-between"><div id="heading"><h1>Description</h1></div><a href="https://unsplash.com/photos/lZ4xZZuk8iA"><div data-placement="top" id="bg-attribution" title="Photo by Josh Withers on Unsplash"></div></a></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><ul></ul></div></div><div class="content col-lg-9"><article><h1>Inspiration</h1><p>India is still primarily an agrarian economy, with the sector contributing to almost 15.4 percent of the net Gross Domestic Product <a href="#citation1">The World Factbook: India, 2018</a> and around 58.6 percent of the population is engaged in some form of agricultural activity. Agriculture is therefore, not only a means of income for a majority of the Indian population, but also a form of cultural identity for farmers across the nation. The fourteenth-century philosopher Ghagh also goes on to declare, rather whimsically, in one of his poems that “Heaven would be found in a farm close to a village [...]”. With agriculture forming such an important part of the cultural and emotional fabric of the country, it was only natural for us to choose a problem that greatly affected the livelihoods of farmers in the country.</p><div class="image"><img alt="A farm in Kerala, India" src="https://static.igem.org/mediawiki/2020/d/d6/T--BITSPilani-Goa_India--img--Desctiption--devadas.jpg"/><p>Figure 1: A farm in Kerala, India</p></div><p>A majority of our team members belong to the Indian states of Karnataka, Maharashtra, Tamil Nadu or Uttar Pradesh — states with the most arable land and states which are major producers of sugarcane (<em>Saccharum officinarum</em>). Sugarcane is not only the primary input in the production of sugar, but it is also an important input in many other industries such as ethanol production and power generation (See Figure 2). The sugar industry is also one of the largest employers of the rural Indian population, providing around 500,000 jobs and impacting the lives of almost 50 million farmers. Evidently, sugarcane is also one of the most widely-grown cash-crop in the country — cultivated on around 50 million hectares of land.</p><p>We therefore chose to work on a problem plaguing both sugarcane farmers and the sugar industry: the problem of post-harvest sucrose deterioration.</p><div class="image"><img alt="Uses of sugarcane in the sugar and allied industries" src="https://static.igem.org/mediawiki/2020/6/66/T--BITSPilani-Goa_India--img--Description--sugarandothers.png"/><p>Figure 2: Uses of sugarcane in the sugar and allied industries</p></div><h1>The Problem</h1><p>Sugarcane is a perennial species of grass that is cultivated primarily for its high sucrose content. The plant contains an enzyme called <strong>invertase</strong> that cleaves sucrose to provide cells with fuel for the processes of respiration and energy and carbon source for the synthesis of chemical compounds. This enzyme plays an important role in sucrose metabolism and regulation <a href="#citation2">Ansari, M. I., et al., 2013</a>. In live cane, the sucrose, therefore, is present under a dynamic balance between its synthesis and utilisation. Once the cane is harvested, this equilibrium breaks down. Instead of maintaining the levels of sucrose, the cells — under stress due to the harvest — hastily break down the sucrose, using invertase, into its components: fructose and glucose. To put this into perspective, harvested cane undergoes a reduction in weight by almost 7.4 to 17.0 percent and a reduction in the amount of sucrose by anywhere between 2 to 10 percent. These losses drastically affect both the farmer and the sugar mills.</p><blockquote><p>(Graphic here to show the action of invertase?)</p></blockquote><p>The retrieval rate of sugar from sugarcane is just 10.25% and this is remarkably low for a country heavily dependent on agriculture, such as India. The income, and therefore the livelihoods, of sugarcane farmers are dependent on the quality of cane they grow, making them the victims of this problem. We therefore wanted to come up with a solution that effectuated grassroot-level changes for farmers like <a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description/Human_Practices">Swaminathan</a>.</p><h1>Current Practices</h1><p>This problem of post-harvest sucrose deterioration is widely known in the sugar industry <a href="#citation3">Saxena et al., 2010</a> but there have been no satisfactory solutions till date. The primary solution used currently to mitigate these losses is to reduce the time taken to transport the cane from the farm to the mill; however India faces acute land shortages which makes it difficult to place mills within reasonable distances of the farm. Moreover, most farmers in India still harvest their crop manually which increases the time period between transport and sugar extraction.</p><p>Although mechanisation is a possible alternative, it exacerbates the problem when applied in unsuitable conditions <a href="#citation4">Ghasemnejad and Jamshidi, 2011</a> and often results in quality deterioration <a href="#citation5">Singh and Solomon, 2003</a>. Singh and Solomon <a href="#citation5">2003</a> also reported that mechanised harvesting and chopping of canes resulted in a quicker deterioration if the time between the harvest and crushing is delayed by more than 24 hours.</p><h1>Our Solution</h1><p>We propose to target the invertase enzyme responsible for this post-harvest loss by “neutralising” it with an anti-invertase enzyme produced by genetically-engineered <em>Escherichia coli</em>. The farmer would introduce our genetically-modified <em>E. coli</em> into the stem of the sugarcane by means of a polymer-based inoculant which would be injected into the sugarcane matrix. Once inside, the genetic circuit inside the bacterial chassis is designed to exhibit anti-invertase activity regulated by the amount of fructose and glucose inside the sugarcane in a continuous and controlled manner.</p><p>Since our bacteria is closely involved with a consumable product (that you probably ingested before/while reading this wiki) we kept in mind the significance of biosafety and designed a robust <a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description/Safety">three-tier failsafe mechanism</a>. At every stage we have tried our best to consult with various stakeholders and subsequently revised our project design to bring it one step closer to being deployable in the market.</p><blockquote><p>(Graphic of <em>E. coli</em> showing how the system works?)</p></blockquote><p>The COVID-19 pandemic has caused widespread economic damage to all sectors of the economy, including the sugar industry. Mills have been non-operational for a significant amount of time due to prevailing restrictions and even when these measures are relaxed, it would take time for the fills to reach their complete capacity. Sugarcane that was already harvested is being <a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description/Human_Practices">stored for long times</a> without any form of preprocessing, exacerbating the problem. This adds even greater relevance to our product.</p><p>Furthermore, sugarcane is also a major crop in countries such as Brazil, Mauritius, Mexico, Cuba and Indonesia. These countries too have been facing problems with post-harvest deterioration. We believe that our product can also be expanded for use in these areas of cultivation.</p><p>SugarGain is our way of making the world a sweeter place (quite literally!).</p><blockquote><p>(Project Logo)</p></blockquote></article><div class="d-flex justify-content-between my-5"><a class="button prev flex justify-content-end short" href="https://2020.igem.org/Team:BITSPilani-Goa_India"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span><span class="button-text">Home</span></a><a class="button next short" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span><span class="button-text">Design</span></a></div><article id="references"><h1>References</h1><ol><li id="citation1"><p class="author"></p><cite>The World Factbook: India. CIA World Factbook.</cite><p><span class="details">(n.d.). Retrieved on August 09, 2020. from </span><a class="in-text" href="https://www.cia.gov/library/publications/the-world-factbook/geos/in.html" rel="noopener" target="_blank">https://www.cia.gov/library/publications/the-world-factbook/geos/in.html</a></p><a class="in-text" href="#intext1">Back to text</a></li><li id="citation2"><p class="author">Ansari, M. I., Yadav, A., &amp; Lal, R. (2013).</p><cite>An-Overview on invertase in sugarcane.</cite><p><span class="journalTitle">Bioinformation</span> <span class="journalInfo">9(9), 464-465.</span></p><a class="in-text" href="https://doi.org/10.6026/97320630009464" rel="noopener" target="_blank">CrossRef</a><a class="in-text" href="https://scholar.google.com/scholar?q=An-Overview on invertase in sugarcane." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext2">Back to text</a></li><li id="citation3"><p class="author">Saxena, P., Srivastava, R. &amp; Sharma, M. (2010).</p><cite>Impact of cut to crush delay and bio-chemical changes in sugarcane.</cite><p><span class="journalTitle">Australian Journal of Crop Science.</span> <span class="journalInfo">4, 692-699.</span></p><a class="in-text" href="https://scholar.google.com/scholar?q=Impact of cut to crush delay and bio-chemical changes in sugarcane." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext3">Back to text</a></li><li id="citation4"><p class="author">Ghasemnejad, M.H. &amp; Jamshidi, A. (2011).</p><cite>Forecast model of sugar loss due to mechanical harvesting of the sugarcane crop.</cite><p><span class="journalTitle">Australian Journal of Basic Applied Sciences.</span> <span class="journalInfo">5(12), 1190-1194.</span></p><a class="in-text" href="https://scholar.google.com/scholar?q=Forecast model of sugar loss due to mechanical harvesting of the sugarcane crop." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext4">Back to text</a></li><li id="citation5"><p class="author">Singh, I., &amp; Solomon, S. (2003).</p><cite>Post-harvest quality loss of sugarcane genotypes under sub-tropical climate : Deterioration of whole stalk and billets.</cite><p><span class="journalTitle">Sugar Tech</span> <span class="journalInfo">5(4), 285-288.</span></p><a class="in-text" href="https://doi.org/10.1007/BF02942486" rel="noopener" target="_blank">CrossRef</a><a class="in-text" href="https://scholar.google.com/scholar?q=Post-harvest quality loss of sugarcane genotypes under sub-tropical climate : Deterioration of whole stalk and billets." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext5">Back to text</a></li></ol></article></div></div></div></main><footer><div id="footerNav"><div class="container"><div class="row justify-content-between"><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Project</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li class="py-1"><a 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Revision as of 00:12, 14 August 2020

Description | SugarGain | iGEM BITS Goa

Inspiration

India is still primarily an agrarian economy, with the sector contributing to almost 15.4 percent of the net Gross Domestic Product The World Factbook: India, 2018 and around 58.6 percent of the population is engaged in some form of agricultural activity. Agriculture is therefore, not only a means of income for a majority of the Indian population, but also a form of cultural identity for farmers across the nation. The fourteenth-century philosopher Ghagh also goes on to declare, rather whimsically, in one of his poems that “Heaven would be found in a farm close to a village [...]”. With agriculture forming such an important part of the cultural and emotional fabric of the country, it was only natural for us to choose a problem that greatly affected the livelihoods of farmers in the country.

A farm in Kerala, India

Figure 1: A farm in Kerala, India

A majority of our team members belong to the Indian states of Karnataka, Maharashtra, Tamil Nadu or Uttar Pradesh — states with the most arable land and states which are major producers of sugarcane (Saccharum officinarum). Sugarcane is not only the primary input in the production of sugar, but it is also an important input in many other industries such as ethanol production and power generation (See Figure 2). The sugar industry is also one of the largest employers of the rural Indian population, providing around 500,000 jobs and impacting the lives of almost 50 million farmers. Evidently, sugarcane is also one of the most widely-grown cash-crop in the country — cultivated on around 50 million hectares of land.

We therefore chose to work on a problem plaguing both sugarcane farmers and the sugar industry: the problem of post-harvest sucrose deterioration.

Uses of sugarcane in the sugar and allied industries

Figure 2: Uses of sugarcane in the sugar and allied industries

The Problem

Sugarcane is a perennial species of grass that is cultivated primarily for its high sucrose content. The plant contains an enzyme called invertase that cleaves sucrose to provide cells with fuel for the processes of respiration and energy and carbon source for the synthesis of chemical compounds. This enzyme plays an important role in sucrose metabolism and regulation Ansari, M. I., et al., 2013. In live cane, the sucrose, therefore, is present under a dynamic balance between its synthesis and utilisation. Once the cane is harvested, this equilibrium breaks down. Instead of maintaining the levels of sucrose, the cells — under stress due to the harvest — hastily break down the sucrose, using invertase, into its components: fructose and glucose. To put this into perspective, harvested cane undergoes a reduction in weight by almost 7.4 to 17.0 percent and a reduction in the amount of sucrose by anywhere between 2 to 10 percent. These losses drastically affect both the farmer and the sugar mills.

(Graphic here to show the action of invertase?)

The retrieval rate of sugar from sugarcane is just 10.25% and this is remarkably low for a country heavily dependent on agriculture, such as India. The income, and therefore the livelihoods, of sugarcane farmers are dependent on the quality of cane they grow, making them the victims of this problem. We therefore wanted to come up with a solution that effectuated grassroot-level changes for farmers like Swaminathan.

Current Practices

This problem of post-harvest sucrose deterioration is widely known in the sugar industry Saxena et al., 2010 but there have been no satisfactory solutions till date. The primary solution used currently to mitigate these losses is to reduce the time taken to transport the cane from the farm to the mill; however India faces acute land shortages which makes it difficult to place mills within reasonable distances of the farm. Moreover, most farmers in India still harvest their crop manually which increases the time period between transport and sugar extraction.

Although mechanisation is a possible alternative, it exacerbates the problem when applied in unsuitable conditions Ghasemnejad and Jamshidi, 2011 and often results in quality deterioration Singh and Solomon, 2003. Singh and Solomon 2003 also reported that mechanised harvesting and chopping of canes resulted in a quicker deterioration if the time between the harvest and crushing is delayed by more than 24 hours.

Our Solution

We propose to target the invertase enzyme responsible for this post-harvest loss by “neutralising” it with an anti-invertase enzyme produced by genetically-engineered Escherichia coli. The farmer would introduce our genetically-modified E. coli into the stem of the sugarcane by means of a polymer-based inoculant which would be injected into the sugarcane matrix. Once inside, the genetic circuit inside the bacterial chassis is designed to exhibit anti-invertase activity regulated by the amount of fructose and glucose inside the sugarcane in a continuous and controlled manner.

Since our bacteria is closely involved with a consumable product (that you probably ingested before/while reading this wiki) we kept in mind the significance of biosafety and designed a robust three-tier failsafe mechanism. At every stage we have tried our best to consult with various stakeholders and subsequently revised our project design to bring it one step closer to being deployable in the market.

(Graphic of E. coli showing how the system works?)

The COVID-19 pandemic has caused widespread economic damage to all sectors of the economy, including the sugar industry. Mills have been non-operational for a significant amount of time due to prevailing restrictions and even when these measures are relaxed, it would take time for the fills to reach their complete capacity. Sugarcane that was already harvested is being stored for long times without any form of preprocessing, exacerbating the problem. This adds even greater relevance to our product.

Furthermore, sugarcane is also a major crop in countries such as Brazil, Mauritius, Mexico, Cuba and Indonesia. These countries too have been facing problems with post-harvest deterioration. We believe that our product can also be expanded for use in these areas of cultivation.

SugarGain is our way of making the world a sweeter place (quite literally!).

(Project Logo)

References

  1. The World Factbook: India. CIA World Factbook.

    (n.d.). Retrieved on August 09, 2020. from https://www.cia.gov/library/publications/the-world-factbook/geos/in.html

    Back to text
  2. Ansari, M. I., Yadav, A., & Lal, R. (2013).

    An-Overview on invertase in sugarcane.

    Bioinformation 9(9), 464-465.

    CrossRefGoogle ScholarBack to text
  3. Saxena, P., Srivastava, R. & Sharma, M. (2010).

    Impact of cut to crush delay and bio-chemical changes in sugarcane.

    Australian Journal of Crop Science. 4, 692-699.

    Google ScholarBack to text
  4. Ghasemnejad, M.H. & Jamshidi, A. (2011).

    Forecast model of sugar loss due to mechanical harvesting of the sugarcane crop.

    Australian Journal of Basic Applied Sciences. 5(12), 1190-1194.

    Google ScholarBack to text
  5. Singh, I., & Solomon, S. (2003).

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