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                 <a href="#<i>Bacillus subtilis</i>"><i>Bacillus subtilis</i></a>
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                 <a href="#Best Sustainable Development Impact">Best Sustainable Development Impact</a>
                 <a href="#Micropullutants in Wastewater">Micropollutants in Wastewater</a>
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                 <a href="#About our Project">About our project</a>
                 <a href="#Laccases">Laccases</a>
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                 <a href="#Which sustainable development goals do we target?">Which sustainable development goals do we target?</a>
                 <a href="#EreB">EreB</a>
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                 <a href="#Conclusion">Conclusion </a>
                <a href="#Modularity">Modularity</a>
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                <a href="#Quorum Sensing">Quorum Sensing</a>
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                <a href="#Kill Switches">Kill Switches</a>
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                <i> Bacillus subtilis</i>
 
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        <a  class="anchor" id="Best Sustainable Development Impact"></a>
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        <h2><b>Best Sustainable Development Impact</b></h2>
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            Scientific research can have positive effects on the development of society. It is important for us, as scientists, to deal with local problems and to identify acute risks. But our task does not end here. We have to look beyond our national borders, because all humans live in this world together and we have to act responsible and protect our environment. We have discussed the term of <b>responsible research</b> in more detail in our <a href="https://2020.igem.org/Team:TU_Darmstadt/HP/Ethics" target="_blank"><b>human practices</b></a> subproject. The United Nations set 17 goals for a sustainable global development to ensure a better future for everyone<sup id="cite_ref-1"><a href="#cite_note-1">[1]</a></sup>. Nevertheless, the set goals are also a balancing act, because the <b>development of society</b> must go hand in hand with the <b>preservation of the planet</b> and also the preservation of our social needs. <br> <br>
  
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We aim to convert micropollutants
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in wastewater treatment plants using an
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enzyme-producing biofilm and came to the
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decision that <I>Bacillus&nbsp;subtilis</i> is the best
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  choice as our biofilm forming organism.
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                <img style="width:200px;" src="https://static.igem.org/mediawiki/2020/8/87/T--TU_Darmstadt--Special_prices_Best_Sustainable_Impact.svg" alt="figure">
<i>B.&nbsp;subtilis</i> is a gram-positive bacterium which is usually found in soil.
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Gram-positive bacteria only have one cell membrane and are thus often used for protein secretion<sup id="cite_ref-1"><a href="#cite_note-1">[1]</a></sup>.
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On the one hand, secreting proteins is beneficial in protein production because no cell disruption is
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  necessary to collect the protein and the formation of inclusion bodies can be prevented<sup id="cite_ref-2"><a href="#cite_note-2">[2]</a></sup>. On the
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  other hand, and in our case specifically, we avoid the issue of bringing enzyme substrates across
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    the membrane in the cell as well as potential cell toxicity of the substrate and degradation product.
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    We want to leverage the ability of <i>B.&nbsp;subtilis</i> to secret proteins to immobilize our target enzymes
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      in the biofilm matrix by fusing them to a matrix protein. This is easier to realize with
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      <i>B.&nbsp;subtilis</i> as gram-positive model organism than with the gram-negative bacteria,
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        e.g. <i>Escherichia&nbsp;coli</i>. In addition, <i>B.&nbsp;subtilis</i> is a facultative anaerobic
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        organism which means it can grow in oxygenic, as well as anaerobic conditions,
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          which can be of advantage when using the biofilm underwater in the clarifier<sup id="cite_ref-3"><a href="#cite_note-3">[3]</a></sup>.
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In nature <i>B.&nbsp;subtilis</i> forms biofilms on plant roots as it needs a nutrient source. The
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advantage for the plants is that <i>B.&nbsp;subtilis</i> protects it from pathogenic infections by funghi<sup id="cite_ref-4"><a href="#cite_note-4">[4]</a></sup>.
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  Since <i>B.&nbsp;subtilis</i> is a natural biofilm former, it has been used as model organism
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  for studying biofilms in the last years<sup id="cite_ref-4"><a href="#cite_note-4">[4]</a></sup>. By using this natural biofilm former, we do not have to
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  worry about how our organism will form a biofilm. Furthermore, <i>B.&nbsp;subtilis</i> is classified as
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    generally recognized as safe (GRAS) by the American&nbsp;Food&nbsp;and&nbsp;Drug&nbsp;Administration&nbsp;(FDA)<sup id="cite_ref-5"><a href="#cite_note-5">[5]</a></sup>, unlike other
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    bacteria which are often pathogenic like <i>E.&nbsp;coli</i> or <i>Staphylococcus&nbsp;aureus</i><sup id="cite_ref-6"><a href="#cite_note-6">[6]</a></sup>. It is very
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    important for us to use an organism which is generally safe given the fact that we want to bring it
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Another characteristic of <i>B.&nbsp;subtilis</i> is its ability to form endospores
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when exposed to extreme environmental conditions<sup id="cite_ref-7"><a href="#cite_note-7">[7]</a></sup>. Spores are highly resistant
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  towards extreme temperature, desiccation, radiation and chemicals. This
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  resistance makes spores interesting for industrial processes, e.g. by displaying
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  enzymes on the surface of spores which can then be used in harsh reaction conditions. Furthermore,
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  they are metabolic inactive but can germinate once nutrients are sufficiently available or when they
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  experience high pressure<sup id="cite_ref-8"><a href="#cite_note-8">[8]</a></sup>.
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                Micropollutants in Wastewater
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As young scientists, we want to contribute with our project to achieving the <b>sustainable development goals</b>. We are primarily concerned about the environment and especially about water supply, because water is essential for life on our planet. Therefore, everyone should have <b>access to clean water</b>, but it's not always possible to guarantee. Even in countries where enough drinking water is available, it is often <b>contaminated with micropollutants</b><sup id="cite_ref-2"><a href="#cite_note-2">[2]</a></sup>. <br><br>
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<b>Ultimately, we won the special price Best Sustainable Development Impact. To see all judging results of our team, <a href="https://2020.igem.org/Team:TU_Darmstadt#Ergebnisse" target="_blank"> click here.</a> </b>
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        <h2><b>About our Project</b></h2>
                Laccases
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                EreB
 
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<b>Wastewater treatment plants</b> are successful in removing most contaminants from wastewater and provide the possibility to <b>manage water resources</b>. In recent years, the awareness for water pollution by pharmaceuticals has increased. Chemical compounds like <b>diclofenac</b> or <b>azithromycin</b> accumulate in global food chains as the treated water reenters the environment, endangering animals and humans alike<sup id="cite_ref-3"><a href="#cite_note-3">[3]</a></sup>. For instance, reports show that several species are brought to near-extinction, most likely due to effects of <b>diclofenac accumulation</b><sup id="cite_ref-4"><a href="#cite_note-4">[4]</a></sup>. Consequently, diclofenac was added to the <b>European Union’s watchlist of priority substances</b> in 2015 due to its rising concentration in European wastewater<sup id="cite_ref-5"><a href="#cite_note-5">[5]</a></sup>. We acknowledge this new threat to the health of our ecosystems and ourselves, and designed <b>wastewater-treating <i>Bacillus&nbsp;subtilis</i> biofilms</b>. These biofilms are capable of enzymatically rendering pharmaceuticals like diclofenac and azithromycin less toxic. The used enzymes, <b>laccases</b> (e.g. CotA or CueO) or <b>esterases</b> (e.g. EreB), are therefore fused to the <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Biofilm#Displaying_Enzymes" target="_blank">major biofilm matrix component TasA of <i>B.&nbsp;subtilis</i> biofilms</a>.  <br> <br>
  
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Consequently, the biofilm-forming bacterium displays the enzyme in its biofilm matrix, which also allows better contact of the enzyme with its pharmaceutical substrates than in the cytoplasm. The display in a biofilm also eliminates the need for additional enzyme purification and immobilization in the area of application, which saves time and resources. Our system is <b>easy to use</b>, as <i>B.&nbsp;subtilis</i> forms the biofilm and produces the enzymes without any additional efforts by humans. The system’s simplicity and the built-in <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Kill_Switch#FinalKillSwitch" target="_blank">kill switch</a> ensure <b>biocontainment</b>, while further methods like the decontamination with e.g. ultraviolet light are also applicable. But how do you actually apply our biofilm? <br><br>  
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Our engineered biofilm is implemented in wastewater treatment plants by growing <i>B.&nbsp;subtilis</i> biofilms on reuseable <b>biofilm carriers</b> which are floating on the wastewater. The carriers are ping pong ball-sized, porous spheres designed to maximize the surface area between biofilm and wastewater. Here, our pharmaceutical-degrading TasA fusion proteins come into contact with the respective pharmaceutical compounds to render them less toxic. The protein fused to TasA is exchangeable and our engineered biofim can thus target different <a href="https://2020.igem.org/Team:TU_Darmstadt/Project/Pharmaceutical_Degradation#Degradationofsubstances" target="_blank">compounds</a> of various chemical structures. With these <b>simple adaptations</b>, we envision our biofilm to be used in a variety of ways and to be adapted to the <b>respective local needs</b>. <br>
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        <h2><b>Which sustainable development goals do we target?</b></h2>
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With our <a href="https://2020.igem.org/Team:TU_Darmstadt/Description" target="_blank">project “B-TOX”</a>, we want to contribute to a <b>responsible and sustainable use of water</b> and thereby target two of the 17 substainable development goals of the United Nations: <br> <br>
  
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<b>6. Ensure access to <b>water and sanitation for all</b><sup id="cite_ref-6"><a href="#cite_note-6">[6]</a></sup>. </b>  <br> <br>
  
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6.3 “By 2030, improve water quality by <b>reducing pollution</b>, eliminating dumping and <b>minimizing release of hazardous chemicals</b> and materials, halving the proportion of untreated wastewater and substantially increasing recycling and <b>safe reuse</b> globally.”  <br> <br>
  
<a  class="anchor" id="Quorum Sensing"></a>
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<b>14. Conserve and <b>sustainably use</b> the oceans, seas and marine resources<sup id="cite_ref-7"><a href="#cite_note-7">[7]</a></sup>. </b> <br> <br>
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14.1 “By 2025, prevent and significantly <b>reduce marine pollution</b> of all kinds, in particular from land-based activities, including marine debris and nutrient pollution.” <br> <br>
  
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Our project identifies most with target 6.3, since it is our intention to improve water quality by reducing pollution and thereby to enable <b>safe global wastewater reuse</b>. We believe our project can <b>improve water management and quality</b> all around the globe by decreasing the level of micropollutants in treated wastewater. We specifically intended our system’s use to be <b>easy and cost-effective</b> to allow its application in regions with low budgets. The plug-and-play fashion of our degrading biofilm allows future users to adjust the displayed degradation enzyme for their needs by exchanging the enzyme domain fused to the biofilm component TasA. <br> <br>
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It is of great importance for us that marine pollution is reduced to a minimum to ensure stable ecosystems for animals and mankind. Consequently, goal 14.1 is also covered with our project. The <b>reduction of marine pollution</b> ensures the reduction of health-risks triggered by the <b>accumulation of pharmaceuticals</b> in the food chain. With the world population increasing, the <b>consumption of pharmaceuticals</b> will also continue to increase, and it thus becomes more important to prevent the pollution of our aquatic ecosystems and food sources. <br>
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With our project, we address the <b>sustainable development goals 6 and 14</b>, expressed by the UN, as we want to contribute to better water quality for mankind and the environment. Our system is able to increase the <b>efficiency of wastewater treatment</b> and to <b>decrease environmental pollution</b> by pharmaceutical compounds. We want to stress that our biofilm system is <b>easy</b> to use, <b>affordable for a broad use</b> worldwide and <b>adjustable</b> for further applications. We believe that our project has the potential to be awarded for the <b>best impact on sustainable development</b>.  <br>  
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  <a class="referencestd" href="https://doi.org/10.1007/s00253-013-4960-4"
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  <a class="referencestd" href="https://sdgs.un.org/"
target="_blank">1.Liu, L.; Liu, Y.; Shin, H. D. Developing Bacillus Spp. as a Cell Factory for Production of Microbial Enzymes and Industrially Important Biochemicals in the Context of Systems and Synthetic Biology. Applied Microbiology and Biotechnology. Springer July 11, 2013, pp 6113–6127 Doi:10.1007/s00253-013-4960-4 </a>
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target="_blank">[1] United Nations Department of Economic and Social Affairs: Sustainable Development</a>
  
<a class="anchor" id="cite_note-2"></a>
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  <a class="referencestd" href="https://doi.org/10.1016/j.bbamcr.2004.02.011"
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  <a class="referencestd" href="https://doi.org/10.1007/s13280-019-01219-5"
target="_blank">2.Westers, L.; Westers, H.; Quax, W. J. Bacillus Subtilis as Cell Factory for Pharmaceutical Proteins: A Biotechnological Approach to Optimize the Host Organism. Biochimica et Biophysica Acta - Molecular Cell Research. Elsevier November 11, 2004, pp 299–310 Doi:10.1016/j.bbamcr.2004.02.011 </a>
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target="_blank">[2] Rogowska, J. et al., Micropollutants in treated wastewater, Ambio, (2019), 49(2):487-503</a>
  
<a class="anchor" id="cite_note-3"></a>
 
<a class="referencestd" href="https://doi.org/10.1078/0723-2020-00108"
 
target="_blank">3.Clements, L. D.; Miller, B. S.; Streips, U. N. Comparative Growth Analysis of the Facultative Anaerobes Bacillus Subtilis, Bacillus Licheniformis, and Escherichia Coli. Syst. Appl. Microbiol. 2002, 25 (2), 284–286 Doi:10.1078/0723-2020-00108</a>
 
  
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  <a class="referencestd" href="https://doi.org/10.1038/nrmicro2960"
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  <a class="referencestd" href="https://doi.org/10.1016/j.envpol.2018.04.012"
target="_blank">4. Vlamakis, H.; Chai, Y.; Beauregard, P. Sticking Together: Building a Biofilm the Bacillus Subtilis Way. Nature Reviews Microbiology. NIH Public Access March 2013, pp 157–168 Doi:10.1038/nrmicro2960 </a>
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target="_blank">[3] Thomas H. Miller, Nicolas R. Bury, Stewart F. Owen et. al, A review of the pharmaceutical exposome in aquatic fauna, Environmental Pollution, (2018), 239:129-146</a>
  
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  <a class="referencestd" href="https://www.fda.gov/food/generally-recognized-safe-gras/microorganisms-microbial-derived-ingredients-used-food-partial-list"
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  <a class="referencestd" href="https://doi.org/10.1371/journal.pbio.0040066"
target="_blank">5. Microorganisms & Microbial-Derived Ingredients Used in Food (Partial List) | FDA https://www.fda.gov/food/generally-recognized-safe-gras/microorganisms-microbial-derived-ingredients-used-food-partial-list (accessed Aug 27, 2020) </a>
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target="_blank">[4] Gerry Swan, Vinasan Naidoo, Richard Cuthbert, et. al, Removing the threat of diclofenac to critically endangered Asian vultures, PLoS Biol., (2006), 4(3):395-402</a>
  
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<a class="anchor" id="cite_note-5"></a>
  <a class="referencestd" href="https://doi.org/10.1093/femsre/fuv015"
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  <a class="referencestd" href="https://www.umweltbundesamt.de/daten/chemikalien/chemikalienwirkungen#prufen-der-umweltwirkung-von-chemikalien"_blank">[5] German Environment Agency: Chemikalienwirkung, accessed 2020-07-15</a>
target="_blank">6.Hobley, L.; Harkins, C.; MacPhee, C. E. Giving Structure to the Biofilm Matrix: An Overview of Individual Strategies and Emerging Common Themes. FEMS Microbiology Reviews. Oxford University Press June 8, 2015, pp 649–669 Doi:10.1093/femsre/fuv015 </a>
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<a class="anchor" id="cite_note-7"></a>
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<a class="anchor" id="cite_note-6"></a>
  <a class="referencestd" href="https://doi.org/10.1101/2020.08.30.273821"
+
  <a class="referencestd" href="https://sdgs.un.org/goals/goal6"
target="_blank">7. Karava, M.​; Gockel, P.; Kabisch, J. Bacillus Subtilis​ Spore Surface Display of Photodecarboxylase for the Transformation of Lipids to Hydrocarbons. bioRxiv 2020, 2020.08.30.273821 Doi:10.1101/2020.08.30.273821 </a>
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target="_blank">[6] United Nations Department of Economic and Social Affairs: Sustainable Development Goal 6 </a>
 
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<a class="anchor" id="cite_note-8"></a>
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<a class="referencestd" href="https://doi.org/10.1128/AEM.71.10.5879-5887.2005"
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target="_blank">8.Black, E. P.; Koziol-Dube, K.; Guan, D. Factors Influencing Germination of Bacillus Subtilis Spores via Activation of Nutrient Receptors by High Pressure. Appl. Environ. Microbiol. 2005, 71 (10), 5879–5887 Doi:10.1128/AEM.71.10.5879-5887.2005 </a>
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<a class="anchor" id="cite_note-7"></a>
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<a class="referencestd" href="https://sdgs.un.org/goals/goal14"
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target="_blank">[7] United Nations Department of Economic and Social Affairs: Sustainable Development Goal 14</a>
  
  
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Best Sustainable Development Impact

Scientific research can have positive effects on the development of society. It is important for us, as scientists, to deal with local problems and to identify acute risks. But our task does not end here. We have to look beyond our national borders, because all humans live in this world together and we have to act responsible and protect our environment. We have discussed the term of responsible research in more detail in our human practices subproject. The United Nations set 17 goals for a sustainable global development to ensure a better future for everyone[1]. Nevertheless, the set goals are also a balancing act, because the development of society must go hand in hand with the preservation of the planet and also the preservation of our social needs.

figure
As young scientists, we want to contribute with our project to achieving the sustainable development goals. We are primarily concerned about the environment and especially about water supply, because water is essential for life on our planet. Therefore, everyone should have access to clean water, but it's not always possible to guarantee. Even in countries where enough drinking water is available, it is often contaminated with micropollutants[2].

Ultimately, we won the special price Best Sustainable Development Impact. To see all judging results of our team, click here.

About our Project

Wastewater treatment plants are successful in removing most contaminants from wastewater and provide the possibility to manage water resources. In recent years, the awareness for water pollution by pharmaceuticals has increased. Chemical compounds like diclofenac or azithromycin accumulate in global food chains as the treated water reenters the environment, endangering animals and humans alike[3]. For instance, reports show that several species are brought to near-extinction, most likely due to effects of diclofenac accumulation[4]. Consequently, diclofenac was added to the European Union’s watchlist of priority substances in 2015 due to its rising concentration in European wastewater[5]. We acknowledge this new threat to the health of our ecosystems and ourselves, and designed wastewater-treating Bacillus subtilis biofilms. These biofilms are capable of enzymatically rendering pharmaceuticals like diclofenac and azithromycin less toxic. The used enzymes, laccases (e.g. CotA or CueO) or esterases (e.g. EreB), are therefore fused to the major biofilm matrix component TasA of B. subtilis biofilms.

Consequently, the biofilm-forming bacterium displays the enzyme in its biofilm matrix, which also allows better contact of the enzyme with its pharmaceutical substrates than in the cytoplasm. The display in a biofilm also eliminates the need for additional enzyme purification and immobilization in the area of application, which saves time and resources. Our system is easy to use, as B. subtilis forms the biofilm and produces the enzymes without any additional efforts by humans. The system’s simplicity and the built-in kill switch ensure biocontainment, while further methods like the decontamination with e.g. ultraviolet light are also applicable. But how do you actually apply our biofilm?

Our engineered biofilm is implemented in wastewater treatment plants by growing B. subtilis biofilms on reuseable biofilm carriers which are floating on the wastewater. The carriers are ping pong ball-sized, porous spheres designed to maximize the surface area between biofilm and wastewater. Here, our pharmaceutical-degrading TasA fusion proteins come into contact with the respective pharmaceutical compounds to render them less toxic. The protein fused to TasA is exchangeable and our engineered biofim can thus target different compounds of various chemical structures. With these simple adaptations, we envision our biofilm to be used in a variety of ways and to be adapted to the respective local needs.

Which sustainable development goals do we target?

With our project “B-TOX”, we want to contribute to a responsible and sustainable use of water and thereby target two of the 17 substainable development goals of the United Nations:

6. Ensure access to water and sanitation for all[6].

6.3 “By 2030, improve water quality by reducing pollution, eliminating dumping and minimizing release of hazardous chemicals and materials, halving the proportion of untreated wastewater and substantially increasing recycling and safe reuse globally.”

14. Conserve and sustainably use the oceans, seas and marine resources[7].

14.1 “By 2025, prevent and significantly reduce marine pollution of all kinds, in particular from land-based activities, including marine debris and nutrient pollution.”

Our project identifies most with target 6.3, since it is our intention to improve water quality by reducing pollution and thereby to enable safe global wastewater reuse. We believe our project can improve water management and quality all around the globe by decreasing the level of micropollutants in treated wastewater. We specifically intended our system’s use to be easy and cost-effective to allow its application in regions with low budgets. The plug-and-play fashion of our degrading biofilm allows future users to adjust the displayed degradation enzyme for their needs by exchanging the enzyme domain fused to the biofilm component TasA.

It is of great importance for us that marine pollution is reduced to a minimum to ensure stable ecosystems for animals and mankind. Consequently, goal 14.1 is also covered with our project. The reduction of marine pollution ensures the reduction of health-risks triggered by the accumulation of pharmaceuticals in the food chain. With the world population increasing, the consumption of pharmaceuticals will also continue to increase, and it thus becomes more important to prevent the pollution of our aquatic ecosystems and food sources.

Conclusion

With our project, we address the sustainable development goals 6 and 14, expressed by the UN, as we want to contribute to better water quality for mankind and the environment. Our system is able to increase the efficiency of wastewater treatment and to decrease environmental pollution by pharmaceutical compounds. We want to stress that our biofilm system is easy to use, affordable for a broad use worldwide and adjustable for further applications. We believe that our project has the potential to be awarded for the best impact on sustainable development.