Difference between revisions of "Team:BITSPilani-Goa India/Model"

 
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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Model | SugarGain | iGEM BITS Goa</title><link href="https://2020.igem.org/Template:BITSPilani-Goa_India/css/landingCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><div id="safari-toast"><p>The Safari browser doesn't support some features of this website. Please switch to Firefox, Edge or Chrome for a better experience.</p></div><nav id="main-nav"><div class="navbar bg-none nav-transparent"><div class="row" id="navbar-row"><a class="navbar-brand" href="https://2020.igem.org/Team:BITSPilani-Goa_India"><i class="navbar-logo"></i><span> Sugar<strong>Gain</strong></span></a><div class="controls h-100 d-flex align-items-center"><div class="align-items-center" id="themeSwitchWrapper"><i class="icon-light"></i><div id="themeSwitch"><label class="switch" for="themeSwitchInput"><input id="themeSwitchInput" type="checkbox"/><span class="slider round"></span></label></div><i class="icon-dark"></i></div><button class="btn" id="menuSwitch"><div class="menu-icon"></div></button></div></div><div class="row w-100" id="progress-container-wrapper"><div id="progress-container"><div id="nav-progress-bar"></div></div></div></div><div id="fullscreenMenuWrapper"><div class="w-100 h-100" id="fullscreenMenu"><div class="container-fluid d-flex align-items-stretch pr-0 flex-column"><div class="row nav-header w-100"><div class="col-xl-3 col-lg-2"><div class="teamLogo"></div></div><div class="col-xl-6 col-lg-8"></div><div class="col-xl-3 col-lg-2"></div></div><div class="row flex-grow-1 w-100"><div class="col-xl-3 col-lg-2"></div><div class="col-xl-6 col-lg-8 d-flex justify-content-between flex-column" id="menuContent"><div class="row"><div class="col-md-6" id="nav-headings"><ul role="tablist"><li><a href="javascript:;" id="Project-tab">Project</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></li><li><a href="javascript:;" id="Human_Practices-tab">Human Practices</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human-Centered Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Education">Science Communication</a></li></ul></li><li><a href="javascript:;" id="Parts-tab">Parts</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts">Parts</a></li></ul></li><li><a href="javascript:;" id="Journal-tab">Journal</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Appendix">Appendix</a></li></ul></li><li><a href="javascript:;" id="Team-tab">Team</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team">Team</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></li><li><a href="javascript:;" id="Contribution-tab">Contribution</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Overview</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></li><li><a href="javascript:;" id="Entrepreneurship-tab">Entrepreneurship</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li></ul></li><li><a href="javascript:;" id="Judging-tab">Judging</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Judging">Judging</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/https:/igem.org/2020_Judging_Form?id=3512">Judging Form</a></li></ul></li></ul></div><div class="col-6" id="nav-items"><div class="tab-content"><div class="tab-pane" id="Project-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></div><div class="tab-pane" id="Human_Practices-pane"><ul><li><a 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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Model | SugarGain | iGEM BITS Goa</title><link href="https://2020.igem.org/Template:BITSPilani-Goa_India/css/landingCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><div id="safari-toast"><p>The Safari browser doesn't support some features of this website. Please switch to Firefox, Edge or Chrome for a better experience.</p></div><nav id="main-nav"><div class="navbar bg-none nav-transparent"><div class="row" id="navbar-row"><a class="navbar-brand" href="https://2020.igem.org/Team:BITSPilani-Goa_India"><i class="navbar-logo"></i><span> Sugar<strong>Gain</strong></span></a><div class="controls h-100 d-flex align-items-center"><div class="align-items-center" id="themeSwitchWrapper"><i class="icon-light"></i><div id="themeSwitch"><label class="switch" for="themeSwitchInput"><input id="themeSwitchInput" type="checkbox"/><span class="slider round"></span></label></div><i class="icon-dark"></i></div><button class="btn" id="menuSwitch"><div class="menu-icon"></div></button></div></div><div class="row w-100" id="progress-container-wrapper"><div id="progress-container"><div id="nav-progress-bar"></div></div></div></div><div id="fullscreenMenuWrapper"><div class="w-100 h-100" id="fullscreenMenu"><div class="container-fluid d-flex align-items-stretch pr-0 flex-column"><div class="row nav-header w-100"><div class="col-xl-3 col-lg-2"><div class="teamLogo"></div></div><div class="col-xl-6 col-lg-8"></div><div class="col-xl-3 col-lg-2"></div></div><div class="row flex-grow-1 w-100"><div class="col-xl-3 col-lg-2"></div><div class="col-xl-6 col-lg-8 d-flex justify-content-between flex-column" id="menuContent"><div class="row"><div class="col-md-6" id="nav-headings"><ul role="tablist"><li><a href="javascript:;" id="Project-tab">Project</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></li><li><a href="javascript:;" id="Human_Practices-tab">Human Practices</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human-Centered Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Education">Science Communication</a></li></ul></li><li><a href="javascript:;" id="Parts-tab">Parts</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts">Parts</a></li></ul></li><li><a href="javascript:;" id="Journal-tab">Journal</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Appendix">Appendix</a></li></ul></li><li><a href="javascript:;" id="Team-tab">Team</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team">Team</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></li><li><a href="javascript:;" id="Contribution-tab">Contribution</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Overview</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></li><li><a href="javascript:;" id="Entrepreneurship-tab">Entrepreneurship</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li></ul></li><li><a href="javascript:;" id="Judging-tab">Judging</a><ul class="mobile-nav-items"><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Judging">Judging</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Awards">Awards</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/https:/igem.org/2020_Judging_Form?id=3512">Judging Form</a></li></ul></li></ul></div><div class="col-6" id="nav-items"><div class="tab-content"><div class="tab-pane" id="Project-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></div><div class="tab-pane" id="Human_Practices-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human-Centered Design</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Education">Science Communication</a></li></ul></div><div class="tab-pane" id="Parts-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts">Parts</a></li></ul></div><div class="tab-pane" id="Journal-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Appendix">Appendix</a></li></ul></div><div class="tab-pane" id="Team-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team">Team</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></div><div class="tab-pane" id="Contribution-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Overview</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></div><div class="tab-pane" id="Entrepreneurship-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li></ul></div><div class="tab-pane" id="Judging-pane"><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Judging">Judging</a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Awards">Awards</a></li><li><a href="https://igem.org/2020_Judging_Form?id=3512">Judging Form</a></li></ul></div></div></div></div><div class="row"><div id="contact-links"><ul><li><a href="https://instagram.com/igem_bits" rel="noopener" target="_blank"><i class="insta"></i><span>Instagram</span></a></li><li><a href="https://twitter.com/igembitsgoa" rel="noopener" target="_blank"><i class="twitter"></i><span>Twitter</span></a></li><li><a href="mailto:igembitsgoa@gmail.com" rel="noopener" target="_blank"><i class="email"></i><span>Email</span></a></li><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Sample"><i class="sample"></i><span>Sample</span></a></li></ul><ul><li><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Acknowledgements">Acknowledgements</a></li></ul></div></div></div><div class="col-xl-3 col-lg-2"></div></div><div class="row nav-footer w-100"><div class="col-xl-3 col-lg-2"></div><div class="col-xl-6 col-lg-8"></div><div class="col-xl-3 col-lg-2"></div></div></div></div></div></nav><style>#header-background {
 
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}</style><header class="d-flex justify-content-center"><div class="custom-container"><div id="header-background"></div><div id="heading"><h1>Model</h1></div><a href="https://freepik.com" rel="noopener" target="_blank"><span data-placement="top" id="bg-attribution" title="Photo from Freepik"></span></a></div></header><main class="hello theme-project"><div class="custom-container"><div class="row"><div class="content fullwidth col-lg-12"><article><h1>Overview</h1><p>Mathematical models are an integral part of our project. They allow us to gain an insight into the functioning of the constructs we designed as well as enable us to predict and verify its behaviour. As we couldn't experimentally verify our claims due the COVID-19 imposed lockdown, these models form the cornerstone of our project.</p><p>We have formed a total of six models that cover various aspects of SugarGain. To provide a brief overview, they are:</p><ol><li>A model to describe our pFruB-Cra anti-invertase construct.</li><li>An <em>in silico</em> simulation of the kill switch.</li><li>An <em>in silico</em> model to study the interactions between invertase and anti-invertase.</li><li>A model to predict the growth of bacteria in the sugarcane matrix.</li><li>A model to determine the composition and optimum viscosity of our novel polymer inoculant.</li><li>A model to explain the relevance of auxotrophy in our chassis.</li></ol><p>Click on a card to be redirected to the page for the respective model.</p><div id="landingCards"><div class="row"><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/pFruB-Cra_System"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/f/f9/T--BITSPilani-Goa_India--img--Biosensor--FruR_patch.gif"/></div><div class="card-info"><h2><span>Model</span>pFruB-Cra System</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Kill_Switch"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/0/05/T--BITSPilani-Goa_India--img--Landing--Kill_Switch.gif"/></div><div class="card-info"><h2><span>Model</span>Kill Switch</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Virtual_Screening"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/d/db/T--BITSPilani-Goa_India--img--Design--AI.gif"/></div><div class="card-info"><h2><span>Model</span>Virtual Screening</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Growth_Model"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/d/d2/T--BITSPilani-Goa_India--img--Landing--Kill_Switch.jpeg"/></div><div class="card-info"><h2><span>Model</span>Growth Model</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Inoculant"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/7/79/T--BITSPilani-Goa_India--img--Landing--Inoculant.jpg"/></div><div class="card-info"><h2><span>Model</span>Inoculant</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Auxotroph"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/1/13/T--BITSPilani-Goa_India--img--Landing--Auxotroph.png"/></div><div class="card-info"><h2><span>Model</span>Auxotroph</h2></div></section></a></div></div></div></article><div class="d-flex justify-content-between my-5"><a class="button prev" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design"><span class="button-background"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span></span><span class="button-text">Design</span></a><a class="button next" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering"><span class="button-background"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span></span><span class="button-text">Engineering</span></a></div></div></div></div></main><footer><div id="footerNav"><div class="container"><div class="row justify-content-between"><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Project</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Human Practices</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human-Centered Design</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Education">Science Communication</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Parts</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts">Parts</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Journal</a><ul><li class="py-1"><a 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id="footerIcons"><a class="gmail" href="mailto:igembitsgoa@gmail.com"></a><a class="insta" href="https://instagram.com/igem_bits" rel="noopener" target="_blank"></a><a class="twitter" href="https://twitter.com/igembitsgoa" rel="noopener" target="_blank"></a></div></div></div></footer><script src="https://2020.igem.org/Template:BITSPilani-Goa_India/landing-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
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}</style><header class="d-flex justify-content-center"><div class="custom-container"><div id="header-background"></div><div id="heading"><h1>Model</h1></div><a href="https://freepik.com" rel="noopener" target="_blank"><span data-placement="top" id="bg-attribution" title="Photo from Freepik"></span></a></div></header><main class="hello theme-project"><div class="custom-container"><div class="row"><div class="content fullwidth col-lg-12"><article><h1>Overview</h1><p>Mathematical models are an integral part of our project. They allow us to gain an insight into the functioning of the constructs we designed as well as enable us to predict and verify its behaviour. As we couldn't experimentally verify our claims due the COVID-19 imposed lockdown, these models form the cornerstone of our project.</p><p>We have formed a total of six models that cover various aspects of SugarGain. To provide a brief overview, they are:</p><ol><li>A model to describe our pFruB-Cra anti-invertase construct.</li><li>An <em>in silico</em> simulation of the kill switch.</li><li>An <em>in silico</em> model to study the interactions between invertase and anti-invertase.</li><li>A model to predict the growth of bacteria in the sugarcane matrix.</li><li>A model to determine the composition and optimum viscosity of our novel polymer inoculant.</li><li>A model to explain the relevance of auxotrophy in our chassis.</li></ol><p>Click on a card to be redirected to the page for the respective model.</p><div id="landingCards"><div class="row"><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/pFruB-Cra_System"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/f/f9/T--BITSPilani-Goa_India--img--Biosensor--FruR_patch.gif"/></div><div class="card-info"><h2><span>Model</span>pFruB-Cra System</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Kill_Switch"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/0/05/T--BITSPilani-Goa_India--img--Landing--Kill_Switch.gif"/></div><div class="card-info"><h2><span>Model</span>Kill Switch</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Virtual_Screening"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/d/db/T--BITSPilani-Goa_India--img--Design--AI.gif"/></div><div class="card-info"><h2><span>Model</span>Virtual Screening</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Growth_Model"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/d/d2/T--BITSPilani-Goa_India--img--Landing--Kill_Switch.jpeg"/></div><div class="card-info"><h2><span>Model</span>Growth Model</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Inoculant"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/7/79/T--BITSPilani-Goa_India--img--Landing--Inoculant.jpg"/></div><div class="card-info"><h2><span>Model</span>Inoculant</h2></div></section></a></div><div class="col-sm-6 col-lg-4"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model/Auxotroph"><section class="card"><div class="card-background"><img src="https://static.igem.org/mediawiki/2020/1/13/T--BITSPilani-Goa_India--img--Landing--Auxotroph.png"/></div><div class="card-info"><h2><span>Model</span>Auxotroph</h2></div></section></a></div></div></div></article><div class="d-flex justify-content-between my-5"><a class="button prev" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design"><span class="button-background"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span></span><span class="button-text">Design</span></a><a class="button next" href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering"><span class="button-background"><span aria-hidden="" class="circle"><span class="icon arrow"></span></span></span><span class="button-text">Engineering</span></a></div></div></div></div></main><footer><div id="footerNav"><div class="container"><div class="row justify-content-between"><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Project</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Description">Description</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Design">Design</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Model">Model</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Engineering">Engineering</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Safety">Safety</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Implementation">Implementation</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Human Practices</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Human_Practices">Human-Centered Design</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Education">Science Communication</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Parts</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Parts">Parts</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Journal</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Notebook">Notebook</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Experiments">Experiments</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Appendix">Appendix</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Team</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Team">Team</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Attributions">Attributions</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Collaborations">Collaborations</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Contribution</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Contribution">Overview</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Software">Software</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Entrepreneurship</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Entrepreneurship">Entrepreneurship</a></li></ul></div><div class="col-sm-6 col-md-4 col-lg-3 py-2"><a class="footer-heading">Judging</a><ul><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Judging">Judging</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/Awards">Awards</a></li><li class="py-1"><a href="https://2020.igem.org/Team:BITSPilani-Goa_India/https:/igem.org/2020_Judging_Form?id=3512">Judging Form</a></li></ul></div></div></div></div><div id="footerBrand"><div class="container"><div class="row justify-content-center"><div id="footerTeamLogo"></div><div id="BITSLogo"></div></div><p>iGEM BITS Goa</p><p>Birla Institute of Technology and Science, Pilani</p><p>K K Birla Goa Campus</p><p>NH-17B, Sancoale, Goa, India</p><div class="row justify-content-center" id="footerIcons"><a class="gmail" href="mailto:igembitsgoa@gmail.com"></a><a class="insta" href="https://instagram.com/igem_bits" rel="noopener" target="_blank"></a><a class="twitter" href="https://twitter.com/igembitsgoa" rel="noopener" target="_blank"></a></div></div></div></footer><script src="https://2020.igem.org/Template:BITSPilani-Goa_India/landing-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>

Latest revision as of 17:08, 16 December 2020

Model | SugarGain | iGEM BITS Goa

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Model

Overview

Mathematical models are an integral part of our project. They allow us to gain an insight into the functioning of the constructs we designed as well as enable us to predict and verify its behaviour. As we couldn't experimentally verify our claims due the COVID-19 imposed lockdown, these models form the cornerstone of our project.

We have formed a total of six models that cover various aspects of SugarGain. To provide a brief overview, they are:

  1. A model to describe our pFruB-Cra anti-invertase construct.
  2. An in silico simulation of the kill switch.
  3. An in silico model to study the interactions between invertase and anti-invertase.
  4. A model to predict the growth of bacteria in the sugarcane matrix.
  5. A model to determine the composition and optimum viscosity of our novel polymer inoculant.
  6. A model to explain the relevance of auxotrophy in our chassis.

Click on a card to be redirected to the page for the respective model.