Attributions
PI of the team:
Hasan Demirci, PhD
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Research Associate at Stanford PULSE Institute
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Assistant Professor at Koc University Department of Molecular Biology and Genetics
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Principal Investigator
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Special thanks to Hasan Demirci for supervising us in the lab and his valuable help throughout the project. He is a great mentor and a true visionary leader.
Lab: https://kuybim.ku.edu.tr/
Email: Hasan_DeMirci@stanford.edu
Secondary PI of the team:
Sedat Nizamoğlu, PhD
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Associate Professor in Electrical and Electronics Engineering at Koç University
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works on Neuron-machine Bioelectronics, Quantum Optoelectronics, Light-emitting diodes, Luminescent Solar Concentrators, BioLasers, Novel Nanomaterials
Website: https://mysite.ku.edu.tr/snizamoglu/
Email: snizamoglu@ku.edu.tr
Advisors
Ayşe Koca Çaydaşı, Ph.D.
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Assistant Professor at Koc University Department of Molecular Biology and Genetics
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Ayşe Koca Çaydaşı kindly guided us along our iGEM journey. She helped us with experiments, finding essential samples, and giving advice in the lab.
Lab: http://mysite.ku.edu.tr/aykoca/
Email: aykoca@ku.edu.tr
Dr. Hafez El Sayyed
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Postdoctoral researcher at University of Oxford
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Investigating transcription dynamics and nucleoid structure using super-resolution imaging of RNA polymerase in live E. coli
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Hafez greatly informed us about plasmid design.
Instructors
Itır Bakış Doğru Yüksel, PhD
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Postdoctoral Researcher at Koç University
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We are thankful to Bakış for guiding us along the way. Our discussions were the seed for this project, and she water those seeds persistently. Besides general support and exchange for project ideas, she greatly helped us to design the hardware.
Alexander Zagajewski
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PhD student at University of Oxford
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We are thankful to Alex for providing us with support on the modelling part. His thesis work was our starting point for time domain electromagnetic models.
Our Team
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Fatih Uçar: Modeling, Wiki writer, Human Practices, Journal Club organizer, Presentation, Video production
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Serena Özabrahamyan: Wiki writer, Figure design, Oocyte Project Design, Presentation, Video production
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Cengizhan Büyükdağ: Wiki writer, Human Practices, Presentation, Translation of Plasmids 101, Structural Bio. 101 video series, Video production
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Özgür Can: Figure designer, Wiki writer, Translation of Plasmids 101, Presentation, Video production
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Oktay Göcenler: Engineering design, wiki writer, Translation of Plasmids 101, Presentation, Video production
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Ali Doğa Yücel: Academy Talks, Wiki writer, Translation of Plasmids 101, Voice of the Project Promotion Video, Figure Design, Presentation, Video production
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Ayşe Buket Pekşen: Wiki writer, Social Media Coordinator, Translation of Plasmids 101, Presentation, Video production
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Ahmet Rasim Emirdağı: Modeling, Wiki writer, Presentation, Video production
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İsmail Hakkı Yeşil: Wiki designer, Presentation, Video production
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Laşin Özbek: Human Practices, Inclusion, Presentation, Video production
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Zeliş Nergiz: Wiki writer, Presentation, Video production
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Ece Türksever: Human practices, Translation of Plasmids 101, Presentation, Video production
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Sueda Özcengiz: Human practices, Translation of Plasmids 101, Presentation, Video production
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İsmail Baturay Altay: Designer, Wiki editor, Superhero’s designer, Translation of Plasmids 101, Presentation, Video production
François Rouleau
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Madina Akan
Lab Support
The Koc University Structural Biology Laboratory (KUYBIM)
We would like to thank the members of the Koc University Structural Biology Laboratory (KUYBIM) who provided us laboratory space, experiments, and advice on how to improve our project. Their help on our project and experiments were priceless.
Website:https://kuybim.ku.edu.tr/
We want to thank Koç University for making all this possible.
Financial Support
Prof. Levent Demirel
Dean of Science Faculty, Koç University
Prof. Dr. İhsan Solaroğlu
Dean of Medicine, Koç University
Prof. Dr. Özgür Barış Akan
Dean of Engineering, Koç University
Prof. Dr. Önder Ergönül
Dean of Engineering, Koç University
Journal Club Acknowledgements
We want to thank Mısra Taşçı for participating in one of our journal clubs as a presenter.
We want to thank Fatma Betül Ertem for participating in one of our journal clubs as a presenter.
Human Practices Acknowledgements
M.D. Eser Uyanık
M.D. Atakan Demir
Hülya Azaklı-Genetiks
Dr. Mara Simopoulou
Dr. Kayhan Yakın
Academy Talks Acknowledgments
Dr.Randy Schekman
Dr.Aubrey de Grey
Dr. Ahmet Yıldız
Dr.Elçin Ünal
Partnership Acknowledgment
Structural Biology 101 Acknowledgments
Burak V Kabasakal
Ayça Şahin
We want to thank SnapGene for their Sponsorship
We want to thank AddGene for letting us translate a part of their Plasmids 101 book
We want to thank IDT and Twist BioScience for their free gene synthesis sponsorship
Mentors
We want to thank Yılmaz Aslan for his interview with dyes with Athens iGEM