Team:SJTU-software/Attributions
We are very grateful to all the teams that helped us test the database, giving us feedbacking and doing our survey. We would like to thank all the people who help us during the past half year. It was because of your sincere support that we could achieve all these accomplishments.
Team assignment
Primary PI
- Dr. Chaochun Wei, director and adviser, offering data source
Advisor
- Yangzhen Wei, brainstorming, giving suggestion to our project
-Haoyu Meng, brainstorming, giving suggestion to our HP part
Team Leader
- Ruiqi Lyu, organizer, human practice participant and algorithm designer
Coding group
- Yifan Wang, designing and coding front end, GO analysis and Random Forest gene-phenotype analysis
- Beiqin Zeng, designing and coding front end,writing web page and do previous research
- Junxi Mu, building wiki and integrate all the material
- Cheng Cheng, gathering information
- Jingshen Xu, designing database, gathering information, building Game Genetics 2048, sample clustering and sample analysis
- Weiyi Li, integrating database and networks, implementing statistical analysis
- Ziyi Yang, designing Virtual Lab
- Chen Zhu, create and maintain the environment for the server, protein sequence analysis and relation discovery with other species
- Yunzhe Jiang, protein sequence analysis and relation discovery with other species, gene classification
- Jianing Li, designing and coding front end
- Nian Tong, designing and coding front end and website style and format design
- Beiqin Zeng, designing and coding front end,writing web page and do previous research
- Junxi Mu, building wiki and integrate all the material
- Cheng Cheng, gathering information
- Jingshen Xu, designing database, gathering information, building Game Genetics 2048, sample clustering and sample analysis
- Weiyi Li, integrating database and networks, implementing statistical analysis
- Ziyi Yang, designing Virtual Lab
- Chen Zhu, create and maintain the environment for the server, protein sequence analysis and relation discovery with other species
- Yunzhe Jiang, protein sequence analysis and relation discovery with other species, gene classification
- Jianing Li, designing and coding front end
- Nian Tong, designing and coding front end and website style and format design
Design group
- Yiqi Xiao, designer of team video
- Dongyun Lu, designer of poster, PPT, website, team hoodie
- Yufan Xu, designer of poster, PPT, website, team hoodie
- Dongyun Lu, designer of poster, PPT, website, team hoodie
- Yufan Xu, designer of poster, PPT, website, team hoodie
HP group
- Xingyu Chen, leader of most Human Practice Program including Xining inveatigation and interview with Professor Zhang
- Menghan Liu, in charge of public engagement HP and deal with collaboration program
- Chenyu Ni, HP participation
- Menghan Liu, in charge of public engagement HP and deal with collaboration program
- Chenyu Ni, HP participation
Detailed works
Even though we have divided us into several groups, we did integreted works in fact.
Previous Research
- Yunzhe Jiang, Xingyu Chen and Menghan Liu made a thorough investigation of the specific application scenarios and needs of rice related synthetic biology and related data resources during the revision of the project, by investigating other people and interviewing may professors.
Database
- Jingshen Xu did a lot of works in the collection of the data. He is one of the main designers of the database. He is responsible for the back-end build of the database. He used sql to build the database for our data as one of the main designers of the database.
Functional website
- Beiqin Zeng and Yifan Wang is our front-end engineer, designed the main page of our website, and implemented the front-end and back-end connections.
- Chen Zhu built and maintained the server for us.
- Chen Zhu built and maintained the server for us.
Wiki
- Yifan Wang designed and completed the production of the wiki page. She also did some wiki writing.
Prediction
- Nian Tong and Junxi Mu designed and completed the production of the wiki page. They also did some wiki writing.
Prediction
- Ruiqi Lyu designed and expanded the global search algorithm: Greedy Equivalence Search, and complete the gene-gene and gene-phenotype analysis.
- Yifan Wang complete a GO analysis and gene-phenotype analysis with Random Forest.
- Yunzhe Jiang and Chen Zhu complete a protein sequence analysis and relation discovery with other species.
- Jingshen Xu finished the sample clustering.
- Yunzhe Jiang fulfilled identification of core gene and rare gene.
- Yifan Wang complete a GO analysis and gene-phenotype analysis with Random Forest.
- Yunzhe Jiang and Chen Zhu complete a protein sequence analysis and relation discovery with other species.
- Jingshen Xu finished the sample clustering.
- Yunzhe Jiang fulfilled identification of core gene and rare gene.
Design
- Dongyun Lu and Yufan Xu designed our team logos, posters, PPT and made website animations and illustrations.
- Ziyi Yang designed a 3D game about synthetic biology.
- Ziyi Yang designed a 3D game about synthetic biology.
Human Practices
I. Education
- Xingyu Chen was the leader of our education program
- Ziyi Yang wrote a science manual for biology in his 3D games. He conducted biological knowledge science work for children through games.
- Menghan Liu and Ruiqi Lyu teached and developed the children's knowledge of synthetic biology during the teaching process.
- Ziyi Yang wrote a science manual for biology in his 3D games. He conducted biological knowledge science work for children through games.
- Menghan Liu and Ruiqi Lyu teached and developed the children's knowledge of synthetic biology during the teaching process.
II. Integreted
- Xingyu Chen contacted and communicated with the teacher.
- Menghan Liu and Ruiqi Lyu contacted and communicated with other students.
- Menghan Liu and Ruiqi Lyu contacted and communicated with other students.
III. Collaboration
- Menghan Liu contacted and communicated with other teams.
Advice and human practice support
Instructors
- Prof. Chaochun Wei, offered us advice on our project and suggestions on our HP
- Prof. Dabing Zhang, giving us advice and professional information about rice
- Dr. Yue Zhang helped us find a meeting room and offered some technical support to our program
- Dr. Ping Zhang, helped us with the educational program
- Prof. Dabing Zhang, giving us advice and professional information about rice
- Dr. Yue Zhang helped us find a meeting room and offered some technical support to our program
- Dr. Ping Zhang, helped us with the educational program
Shanghai Jiao Tong University
- School of Life Science and Biotechnology in SJTU
- School of Electronic Information and Electrical Engineering
- School of Design in SJTU
- Shanghai Jiao Tong University School of Agriculture and Biology
- School of Electronic Information and Electrical Engineering
- School of Design in SJTU
- Shanghai Jiao Tong University School of Agriculture and Biology
CCIC
Shenzhen institue of advanced technology , chinese academy of sciences host ed 7th CCiC iGEM Conference, invited us to the conference , gave us an opportunity to prent our project and communicate with each other and gave us some advice about our project.
2018 SJTU-software & 2019 SJTU-software
Our former team members gave us many suggestions in many aspects.
