Our Project on a Timeline

The team met for the first time on March 6, 2020 and our ideas spanned over healthcare, climate change, and outer space! As we killed our darlings and narrowed down through our proposals, we realized that, in parallel with Covid-19, the need for quicker testing and monitoring in healthcare was prominently exposed. Thus, CIDosis (working name at the time: InFLAMometer) was born on April 19, 2020. Throughout spring and summer, we worked on brainstorming ideas for a project, going through the deliverables and past projects and forming subgroups to divide the work as evenly as possible. Since we couldn’t enter the lab till July, we focused our attention on designing parts, primers, how to do dry lab modelling, outreach and human practices. Of course, Covid-19 has posed a challenge for us throughout the year. Every milestone we unlocked was backed by thwarting the restrictions imposed due to the virus. Only a few of us could go to lab in the summer, and as disheartening as it was, the lost time was compensated in interacting with stakeholders of CIDosis such as doctors, researchers and patient groups. We also began our journey on how to translate a scientific idea into a biotech/medtech start-up. All these experiences have enriched our iGEM journey, and for that, we would sincerely like to thank the iGEM Foundation. The atmosphere within the team, the meetups, cabin trip and overall repertoire has made this journey worth it, and for that, we have several people to thank for!

Our Accomplishments

The iGEM team conducted meetings, performed lab work, and had an office at the Department of Plant and Environmental Sciences (PLEN) at University of Copenhagen (UCPH).

At UCPH, iGEM is not a course, but an independent team project guided by PLEN department employees. It has been a continuous shuffling between human practice research and interviews, scientific development and innovation throughout the summer.

Everything on our wiki is done by ourselves unless otherwise stated. The filming and editing of our promotion and presentation videos is done exclusively by our team. However, we have included inputs from our advisors in regards to the storyline.

Lab

Everyone on our team has helped in the lab, cloning yeast, making colonies, doing PCRs and DNA extraction. However, our two main lab coordinators Emil and David have been instrumental for the success of our experiments! They have slept over at PLEN just to make sure that we got the desired results.

Project Management

We have had a non-hierarchical team structure; thus, everyone has been part of all main decision on the team, and our focus has been on a collected management of our project and shared responsibilities. Our project coordinators, Aje and Jan, allowed the team to flourish by taking on the hard responsibilities of deadlines and planning. They also spent time listening individually to the team members and managing any conflicts from arising.

Wiki

Everyone on our team has written the wiki! Without the contributions from everybody the wiki would not have been what it is today. Still, we would like to attribute the main design and structure of our wiki to our wiki coordinators Aje, Victoria and Emil. They have pulled a heavy load, learning how to code in different languages so that we can all share our results in style! They dedicated days and nights in ensuring we documented every effort and milestone, get the colour scheme right and maintain uniformity through all the different sections.

Human practice

Everyone has been a part of shaping the pathway for our human practice. Although the entire team reached out to different contributors of our project, the main work has been done by our HP coordinators Endre, Ignacio and Shivani. They made sure our surveys were sent out, the data was analysed, and the information conveyed to the lab and entrepreneurship team so they could make the necessary modifications based on the input we received.

Dry lab

Although the modelling goals have been formulated in a shared effort, the execution of our modelling work has been carried out in great deal by our main dry lab coordinator Vit, who took care of our modelling using MATLAB, Rosetta, with help in parts from Aje, Jan and David.

Funding & Entrepreneurship

Although many of us contributed in various ways to the funding efforts, we would like to attribute our success in part to the funding coordinators Victoria and Ignacio, who with help from the rest of the funding team, Vit and Endre, carried out majority of our funding applications. All four, in addition to Shivani, also contributed to the entrepreneurship completed in the project. Victoria, Ignacio, Vit, Shivani and Emil also joined the SUND Hub Incubator Program to learn the ropes of biotech start-ups.

Outreach

Thanks to our coordinator Shivani for managing our social media and outreach. The outreach team oversaw the different social media: WordPress and Facebook - Shivani

Instagram - Aje

Twitter – Emil

LinkedIn - Jan

Project support and advice

Principal investigators

Sotirios Kampranis,

Associate Professor at PLEN

Sotirios is an Associate Professor at the Section of Plant Biochemistry. He has helped us immensely throughout the iGEM season – he sat in on our meetings, guided us through the brainstorming process, advised us on valuable input on applicability and viability, helped us to design our science experiments and also provided us with an iGEM workspace, materials and equipment, training and guidance in his lab to conduct experiments. He has also helped us in our applications for funding and ideating the promotional and presentation videos. We are so grateful to him for his support and approachable nature!

Karel Miettinen,

Postdoc at PLEN

Karel is a postdoc working with Sotirios at PLEN. As our secondary PI, Karel has been very invested in our project. We have been in daily contact with him regarding all matters of scientific planning. He has provided us with immense scientific guiding and an uplifting spirit in the lab. He knows all there is to know about yeast, and his well of knowledge has helped the lab team advance throughout the project.

Advisers and instructors

Nanna Heinz,

Center coordinator at PLEN

Nanna has been our team mentor throughout the year. She has helped us establish trust in the team and define a structure in which we could all be an equal part of the team and project direction. She has been an important part of our daily iGEM life, guiding our idea process, setting up meeting-structures, and facilitating a healthy, independent team environment. She has offered her advice on a number of issues throughout the project and aided a great deal in our management of iGEM deadlines and deliverables. She has single-handedly managed our HR and bridged the road for the team from strangers to friends, whilst helping us maintain a safe environment to put forth our ideas and motivating us during the tough times.

Jon Fugl,

Ph.D at PLEN and former iGEMer (InCell 2017)

Jon used his experience as an iGEMer to guide us during our idea development phase. He has provided us with valuable advice and support, even hosting a workshop for us on biobricks early on in our process.

Cecilie Cetti Hansen,

Ph.D at PLEN and former iGEMer (UNIK 2014)

Cecilie is a former iGEM member and has experience with mentoring in multiple aspects of an iGEM project. She has given us valuable advice on how to go about human practices, Wiki, and outreach.

Nattawat Leelahakorn,

Ph.D at PLEN and former iGEMer (PharMARSy, 2018)

Nattawat has helped the lab team immensely with everything from troubleshooting, mastering new techniques and finding the right materials in lab. We are thankful that he was there to help us out even when we were working till late at night!

Jonas Hansen,

Master student at PLEN and former iGEMer (Ovulaid, 2019)

Jonas has been instrumental in helping us navigate in the lab and has shared his experience from last year to help us make 'new' mistakes.

Iben Egebæk Nikolajsen,

Master student at PLEN and former iGEMer (Ovulaid, 2019)

Iben gave us extensive advice on funding, management, human practices as well as outreach and sat in on a few meetings to help guide us. She has also provided us with a lot of moral support!

General support at PLEN

Tilla Augusta Engelsted,

Laboratory Coordinator, PLEN

Tilla has been extremely helpful in giving the iGEM team safety tours and ensuring we had access to registers where we could order any lab materials we needed. She was also instrumental in giving us access to the lab so that the entire team could try some science in action whilst adhering to the restrictions due to Covid-19!

Jette

???, PLEN

Thank you, Jette, for helping us with administrative tasks, easing our conversations at the PLEN office and taking care of funding for our social and educational activities!

Kirsten

???, PLEN

Thank you for helping us with our project approval.

Birger

???, PLEN

Thank you for believing us, and for supporting us during the entirety of the project

Annett

???, PLEN

Thank you for your valuable advice on public engagement and tips on entrepreneurship

Claudia Lassen

Master student at ?? and former iGEMer (Ovulaid, 2019)

Thank you to Claudia, from Ovulaid, iGEM 2019, for giving us advice on how to do wiki in the early stages of our project

Irini Pateraki and Simon Louis Théodore A Dusséaux, PostDoc, PLEN

Assistant Professor and PostDoc (respectively), PLEN

Workshop with Irini and Simon are researchers at our host lab in PLEN. The workshop held by Irini and Simon taught us about cloning strategies and how to simulate on a supercomputer. They made the science behind synthetic biology more understandable. Thank you to both of them!

Human Practice Support

Human Practices is all about help from others. We are grateful to everyone who helped with our integrated human practices. Furthermore, we would also like to thank SynEthics and the iGEM Lund team for helping us curate the Ethics Guide.

App

We would like to attribute our app idea to the work previously done by Ovulaid in 2019. They developed the groundwork for an app to analyze color intensity on an image. We utilized their principles and made our own version of the user interface to match our project.

Funding & Entrepreneurship support

SUND Hub

We would like to thank SUND Hub, the innovation and incubation hub for start-up coming out of the Faculty of Health and Medical Sciences, University of Copenhagen, for allowing us to be part of their annual SUND Hub Incubator Program and giving us opportunities to meet people who can help us develop a business model and methods to target customers. We would especially like to thank Peter Løvschall and Anna Vestergård Jacobsen, who are currently heading the place. We would also like to thank Peter for putting us in touch with Nina Brocks, who is an innovation consultant at Region Hovedstaden. She understood our project and needs and helped us fill in the gaps by putting us in contact with Jakob Seidelin, about whom you can read more on here.

Lab and Modelling Support

Marcus Meydom Ryding, DTU

Helped our understanding of modelling and dry lab. Workshop about characterization and standardization of parts.

Kurt Mikkelsen

Helped us with access to supercomputer for modeling our data on Rosetta

Distribution of Survey

We would like to thank everyone who ahs helped us distribute our survey. This includes:

Kronisk-syg (Facebook)

iGEM IISER Berhampur

Team:UCopenhagen/Attributions